Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1200 ATGGGTTCTTTGTCTGGTATGGTTGAAGCAAGAAAAGAGAAGGATCCAATTCAAAATTCCAAGGGATCTTATCGACCAAATTTCAGATCTAGTGACAGAAGTCCGAGACTTCCTCCACTAAAAGTCGGATACAAGCATTCTTTAGATAAAGAAATCAATCAGCTTTTGGAGGCAGTTAGTCTTAAAGGTACACCAAAGAATACGGGTCTTTCACAAGTAGGCACAAGACCATTACAGAAAAATGCGTTAAAGAAGCCAATTACCAATACCACTCACCGTTCTCCAGAAATTGGATTTTCTGAGCCGACTAGTCTGAAGAAAACTTTAAGGGATGTATGTGTTTCAAAGGCATCAGGAGTGGCTGCCATGAGAAGACTAACACAATCAGCAGACTTTTCAGGAGCCTCCGAAGCTGGACGAATCAAGTCATTGTACAATTCAGTCGTAGTTGAATCCAATCAATCTGGCCTTCGCATCAAAGACAGTAAAGGAAGGGCGGTTAAAATATCCTTTCTGCCTGAGGATAGAAAACCAAACTCTTCTCCAAAAACGCCCGAGCATATTCATGTCCCAAAGGTCTCGTCATTGAGCAAAAGTGCGCATTCTTCTCCTCGGTTAACTGCTTTAGCAACACCAAACAGTGCTAAGACTATACTGGTGAAGAACGAGATTGCATCTGATTCAAGGAAAGTTGGGATTCAAAATTCAAAGAAAGAAATTGTAAGGAAAGATAGGAGTGGATCTGCTCCTTCTCATTCTAATACTCTTGACAATGTGCTAGATGGAAATGAAAATATTTCCTCCTCGACCAAGGTGGTAAACAAAGTGAAATCATCAAGTCCCGGGCATAAAGGCAGGTTGCTAAGAGTGTCTCCATCTGACTCCATTGATGGAAATAAAGCAAGCAAGTCTTCCCGGAAAGTCAAACCTAAGGACCTTGTTAATACTATGGTAAAACCGGACTCGAGTACGCTTGATACAGGTATCAATGCCAGTGGTGTTAGTACGAGCCAGCTCTTATGTGAGAGATGCAACTGCTCTTTGAAGACTAATTCTAAGGAATCGGAAACAAATTCTATGGCCTCCATTTATACAAGTCTTGCTACTGAATTAAGCTCGAGTAATGCAACTTCTAGTATAATCAAACAAAGCATCGCTTTGGATAGCAGCAATAGAAGTGAAACACCTTCTTCATTAAATAGTAGCCATGGTGAATATAGTACTAGTACAGCAAGTTTTAGTTATGACAGCAGCGTAAGAAGGTCCAGTTGTAGCACCCGGCCCCACATGTCGAAGGATCTTAAATGGGGAGCCATTCGTCATATTCGGCAGCAAGGAGCCGTTGGTCTGAAACACTTCAAAATTTTGAAGAAGCTTGGTGCTGGAGACATTGGAGATGTTTATCTTGCCAAGCTTATTGGTACAAATTGCTTATTTGCCATAAAGGTGATGGACAATGAGTTCTTAGAAAGAAGGCAGAAGATGCCAAGAGTCCAAACGGAAAGAAAAGTACTGAAAATGCTCGATCATCCATTTCTGCCAACACTTTATGCACATTTTACATCAGACAATCTGTCATGTCTGGTCATGGACTATTGTCCTGGTGGAGATCTTCATGTTCTTCGCCAGAAACAGCCTGGCGGGACTTTTCCCGAATCAGCAGCAAGGTTTTATGTTGGGGAAGTTCTTCTTGCTGTAGAGTATTTGCACATGCTAGGTGTTATTTATCGAGATTTGAAACCCGAAAATGTTCTTGTCAGAGAAGATGGTCATATTATGCTCACAGATTTTGATCTCTCACTCAGGTGCTCTGTCAATCCAACTCTCTTAAAAGCTTCTATAAAACCCGATCTTATAAAGCTGTCTAGGCAATACACTGAATCCAGTAATTCAGTTGATCCATTTTGCATGGTTCCATCTTGTCAAGTCTCATGCTTTAGTCCTCGGTTTTTACCCAGTTCTTCTAAATCAAGGAAGTTAAAGCCTGACCCATCTACTCAAACACGATCATTGCCGCAACTTATTGTGGAGCCTACTGATGCAAGATCAAACTCCTTTGTTGGGACCCACGAGTACTTAGCCCCCGAGATCATCCAAGGGGAGGGCCATGGGGCAGCAGTTGATTGGTGGACACTTGGAATCTTTCTATACGAGCTTTTATATGGTAGGACCCCATTCCGAGGTTCCAATAATGAAGAGACATTGGCTAATGTGGTTCTGCAGAGGCTCGATTTTCCGGATAGTCCACCTGTTAGTTCCAGGGGAAGGGATCTTATTCGAAGATTACTGGTCAAAGAGGCTAAGAATCGGTTTGGGTCGGAGAAAGGGGCCGCTGAGATTAAACAGCACCCATTCTTTCATGGTCTTAACTGGGCATTAATTCGATGTGCCTGTCCACCGGAACTCCCGGAGTTGTTTGATTATGATGTTACAGACGTTGATGTTCAGGAAGAAAACAGGTATCTGGAGTGTAAGGCTAATGGAGACCACTTGGAGTTTGAGTTGTTCTAG 2511 42.41 MGSLSGMVEARKEKDPIQNSKGSYRPNFRSSDRSPRLPPLKVGYKHSLDKEINQLLEAVSLKGTPKNTGLSQVGTRPLQKNALKKPITNTTHRSPEIGFSEPTSLKKTLRDVCVSKASGVAAMRRLTQSADFSGASEAGRIKSLYNSVVVESNQSGLRIKDSKGRAVKISFLPEDRKPNSSPKTPEHIHVPKVSSLSKSAHSSPRLTALATPNSAKTILVKNEIASDSRKVGIQNSKKEIVRKDRSGSAPSHSNTLDNVLDGNENISSSTKVVNKVKSSSPGHKGRLLRVSPSDSIDGNKASKSSRKVKPKDLVNTMVKPDSSTLDTGINASGVSTSQLLCERCNCSLKTNSKESETNSMASIYTSLATELSSSNATSSIIKQSIALDSSNRSETPSSLNSSHGEYSTSTASFSYDSSVRRSSCSTRPHMSKDLKWGAIRHIRQQGAVGLKHFKILKKLGAGDIGDVYLAKLIGTNCLFAIKVMDNEFLERRQKMPRVQTERKVLKMLDHPFLPTLYAHFTSDNLSCLVMDYCPGGDLHVLRQKQPGGTFPESAARFYVGEVLLAVEYLHMLGVIYRDLKPENVLVREDGHIMLTDFDLSLRCSVNPTLLKASIKPDLIKLSRQYTESSNSVDPFCMVPSCQVSCFSPRFLPSSSKSRKLKPDPSTQTRSLPQLIVEPTDARSNSFVGTHEYLAPEIIQGEGHGAAVDWWTLGIFLYELLYGRTPFRGSNNEETLANVVLQRLDFPDSPPVSSRGRDLIRRLLVKEAKNRFGSEKGAAEIKQHPFFHGLNWALIRCACPPELPELFDYDVTDVDVQEENRYLECKANGDHLEFELF 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9287179 9290493 + Conep13aG0123300.1 Cone13ag1200 451587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1200 836 Gene3D Phosphorylase Kinase; domain 1 451 532 - -
Cone13ag1200 836 MobiDBLite consensus disorder prediction 172 207 - -
Cone13ag1200 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 574 586 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1200 836 SMART serkin_6 453 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1200 836 Pfam Protein kinase domain 683 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1200 836 Pfam Protein kinase domain 454 604 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1200 836 MobiDBLite consensus disorder prediction 390 410 - -
Cone13ag1200 836 Gene3D Transferase(Phosphotransferase) domain 1 533 601 - -
Cone13ag1200 836 FunFam serine/threonine-protein kinase D6PK-like 537 604 - -
Cone13ag1200 836 MobiDBLite consensus disorder prediction 232 246 - -
Cone13ag1200 836 MobiDBLite consensus disorder prediction 247 277 - -
Cone13ag1200 836 MobiDBLite consensus disorder prediction 229 311 - -
Cone13ag1200 836 FunFam serine/threonine-protein kinase D6PK-like 681 804 - -
Cone13ag1200 836 CDD STKc_phototropin_like 451 805 - -
Cone13ag1200 836 ProSiteProfiles Protein kinase domain profile. 453 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1200 836 PANTHER FLIPPASE KINASE 1-RELATED 304 809 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone13ag1200 836 SUPERFAMILY Protein kinase-like (PK-like) 437 814 IPR011009 -
Cone13ag1200 836 Gene3D Transferase(Phosphotransferase) domain 1 680 804 - -
Cone13ag1200 836 MobiDBLite consensus disorder prediction 1 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1200 Cone-Chr13:9287179 Cone3ag0209 Cone-Chr3:1113014 2.05E-290 dispersed
Cone1ag0527 Cone-Chr1:5199629 Cone13ag1200 Cone-Chr13:9287179 1.57E-125 wgd
Cone10ag0177 Cone-Chr10:861393 Cone13ag1200 Cone-Chr13:9287179 8.14E-290 wgd
Cone11ag1361 Cone-Chr11:9912074 Cone13ag1200 Cone-Chr13:9287179 1.24E-197 wgd
Cone13ag1200 Cone-Chr13:9287179 Cone18ag0217 Cone-Chr18:1076442 3.57E-194 wgd
Cone13ag1200 Cone-Chr13:9287179 Cone19ag1184 Cone-Chr19:8299360 0 wgd
Cone13ag1200 Cone-Chr13:9287179 Cone5ag1353 Cone-Chr5:8149607 5.03E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82045 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1200 - - - 0.0