Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1205 ATGCAGTATACTACTTCACAATCTACAACAAATCAATCCAGTTCGGGTAGTACAAGTAGTAATAACAAATTAGTTAATAATATTATTTCCGGTGGTTCCCCGGTTTATCGGGGAGTAAGGCGTAGGAACACGGGAAAATGGGTTTCGGAGATTAGAGAACCAAAAAAGCCAAATAGGATTTGGTTGGGAACATTTGCTACACCGGAAATGGCTGCAATTGCTTATGATGTAGCGGCACGTGCCCTCAAGGGTCCAGATGCTGAGCTTAATTTCCCAAACTTGGCCTCTTCTCTGCCCGTTCCGGCTTCTAACTCTCCACCTGATATCCAATTGGCAGCGGCATCTGCGGCTACTGCATTGGGGGCGGCAGCGGTGGCCATGGAGGAGGGGACAGGTGTCGGAAAATCATTAGCGAGCGGTCATCTTGCGGATAATTTTGATGGTAGGAAACAAAAGGAAATGGAAGGGGGGAATATTGTTAGGGAAGACATGGTTGACGTTGATCCTGATCAATTCGTTGATGAGGATATGATATTCGATATGCCTAATGTTTTGATGGATATGGCAAAAGGCATGCTTCTTAGCCCTCCTCGCTTAGACAATGGCGGCGCAATGGACGTAGACGACGAAAATACCGTGGATCATGAGACAACCCTTTGGATATTTCACTAG 672 46.13 MQYTTSQSTTNQSSSGSTSSNNKLVNNIISGGSPVYRGVRRRNTGKWVSEIREPKKPNRIWLGTFATPEMAAIAYDVAARALKGPDAELNFPNLASSLPVPASNSPPDIQLAAASAATALGAAAVAMEEGTGVGKSLASGHLADNFDGRKQKEMEGGNIVREDMVDVDPDQFVDEDMIFDMPNVLMDMAKGMLLSPPRLDNGGAMDVDDENTVDHETTLWIFH 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9320274 9320945 - Conep13aG0123800.1 Cone13ag1205 451592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1205 223 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag1205 223 FunFam Ethylene-responsive transcription factor 2 34 93 - -
Cone13ag1205 223 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag1205 223 Pfam AP2 domain 34 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag1205 223 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677(InterPro)
Cone13ag1205 223 CDD AP2 36 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag1205 223 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 186 IPR051032 -
Cone13ag1205 223 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag1205 223 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag1205 223 SMART rav1_2 35 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone13ag1205 223 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1205 Cone-Chr13:9320274 Cone6ag0748 Cone-Chr6:3795049 2.24E-39 dispersed
Cone3ag0206 Cone-Chr3:1091642 Cone13ag1205 Cone-Chr13:9320274 1.38E-57 transposed
Cone13ag1205 Cone-Chr13:9320274 Cone19ag1192 Cone-Chr19:8341322 3.49E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44667 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1205 - - - 0.0