Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1213 ATGGAAATGCCCGGCCGAAGATCGAACTACACGCTTCTAAGTCAGATTCCATACGATCCGTTAGGCGGTGGAGTAGCAGTTCAAGGAACGGGAGCTGCAACGTTTTACGAGTCATTGTCCGGGGAAGGAAAGAATAGTAAGGGAAAGGCGGAGAAAGGACTCGACTGGGAAGCTGGAGCTGATCACAAGGCGAATCAGCTCGGTAATCGGCTAGGAAACATGTACTCTTCGCTGCAGAGGCAATCGAGTGGAAGCAGCTTCGGCGAGAGCTCGCTTTCTGGTGAGTACTGCGCGCCAACGCTATCTACTGGTACGACAAACGAGATCGATGCCTTTCCGTATATGCATGACGATGGATTCAGAATCGGAGGTGAATTGAGGGCTAAGGTGTTGGATGGAGTTATGGGAACATGTGGATCGTCAGGGAAGAGTTGGGCGCAGCAAACGGAGGAGAGTTATCAGCTGCAGTTAGCCTTAGCGCTTAGGCTTGCATCGGAGGCAACGTGTGCTGATGATCCTAATTTTTTGGATCCAGTGGTCGATGAGTCTTCCCTGAGGTCCTCTTCTTGCTCAGCCGAAGCAGTCGCACACCGATTTTGGGTGAATGGCTGCCTATCATACTGTGATAAAGTTCCGGATGGATTTTATCTGATTCACGGCTTGGATCCGTATGTGTGGTCTGTGTGCACTGATCGGCACGAGAATGATCGGATGCCATCAATTGAATTGCTAAAGTCTATTGATCCTAGCATGGATTCTTCGATCGAATCTATTTTTATTGATCGACATAGTGATTCCAGCTTAAAGGAACTCCAAAATCGAGTTCACAGCATTTCTCGTGGCTGTATAACCACTGAAGAGGTTGTAGATCAGCTTGCAAAGCTTGTATGCAAGCGCATGGGTGGCTCTGTTTCCAATGGAGAAGATGATTTAGCATCCATCTGGAGGGAATGCAGCGACGACTTAAAATACTGCTTAGGATCTGTTGTTGTTCCAATTGGAAGCCTATCTATTGGCTTATGCAGACATCGTGCTCTATTATTTAAAGTGCTGGCTGACACAATTGATTTACCTTGTCGAATAGCAAAAGGTTGCAAGCATTGCACAAGAGATAATGCTTCTTCATGTCTTGTCCATTTTGGACTCGGCAGGGAGTACCTTGTTGATTTGATCGGAAATCCAGGCTGCCTCTGTGAGCCTGATTCCTTACTTAATGGTCCTTCATCCATCTCAATTTCTTCGCCTTTGCGCTTTCCACGACTCAATACAGTTGAGCCGATTATTGATTTCAGGTCACTGGCCAAACAGTACTTCTCAGAATGTCAATCACTTAACATTATATTTGATGAAGCTCCCACAGGAAAGGTTGTTGGAGAAGATGGTGTTGATAAGAAGACCACTGAGAGAAAAGACTTAATGCTTGTGTCAGGTCTTGGAAATTATCCAGTTCCCTTGAACCATTTCCCACAGCTCAGTTTTAGATTTCCACCACCTCTGGCATTGTCTCATATGAGAATGGATCCTACTAGGGGTACGAGGTTTGTGGATGGATGTCAACTGGTTCCAAGTAGAGAAATATCTCTTGACATAGAGGACTTGACTATTCCATGGAGTGACCTTGTTATCAAAGAGAGAATTGGATCAGGTTCTTTTGGAACCGTTCATCGTGCTGATTGGCATGGCTCGGATGTTGCTGTGAAGATTCTCATGGAACAAGACTTCCATGCTGAACGCTTTAAAGAATTTCTGTGGGAGGTTGCGATAATGAAACGCCTACGGCATCCCAACATAGTTCTGTTTATGGGGGCAGTCACTCAGCCCCCAAACTTGTCTATAGTAACAGAATATCTTTCAAGAGGTAGCTTGTATAGGCTTTTGCATAAACCAGGTGCCAGAGAGATGTTAGATGAGAAGCGTCGATTAAATATGGCTTATGATGTGGCAAAAGGAATGAATTATCTTCATAGATGCAATCCTCCAATTGTTCATCGCGATCTAAAATCTCCAAACCTTTTGGTTGACAAAAAGTACACAGTGAAGGTTTGTGATTTTGGTCTCTCTCGCTTAAAGGCAAACACATTTCTTTCATCGAAGTCGACAGCAGGGACTCCTGAATGGATGGCTCCAGAAGTTCTCCGTGATGAGCCATCAAATGAGAAGTCGGATGTTTACAGCTTTGGTGTAATTTTGTGGGAGCTTGCAACACTGCAACAGCCATGGGGTAATTTAAATCCAGCACAGGTTGTTGCTGCTGTTGGATTTAAGTGCAAAAGACTCGAGATCCCACGTGATTTGAATACTAGAGTAGCTTCCTTAATAGAGGTTTGCTGGGCCAACGAGACGTGGAAACGCCCATCCTTTTCAAGCATAATGGAATCCTTGAGACAATTGATTAAACCCAGTACGCCTCAACCAGGCAGTGAGGACTTGTCGTTAGTTGCGTGA 2445 45.19 MEMPGRRSNYTLLSQIPYDPLGGGVAVQGTGAATFYESLSGEGKNSKGKAEKGLDWEAGADHKANQLGNRLGNMYSSLQRQSSGSSFGESSLSGEYCAPTLSTGTTNEIDAFPYMHDDGFRIGGELRAKVLDGVMGTCGSSGKSWAQQTEESYQLQLALALRLASEATCADDPNFLDPVVDESSLRSSSCSAEAVAHRFWVNGCLSYCDKVPDGFYLIHGLDPYVWSVCTDRHENDRMPSIELLKSIDPSMDSSIESIFIDRHSDSSLKELQNRVHSISRGCITTEEVVDQLAKLVCKRMGGSVSNGEDDLASIWRECSDDLKYCLGSVVVPIGSLSIGLCRHRALLFKVLADTIDLPCRIAKGCKHCTRDNASSCLVHFGLGREYLVDLIGNPGCLCEPDSLLNGPSSISISSPLRFPRLNTVEPIIDFRSLAKQYFSECQSLNIIFDEAPTGKVVGEDGVDKKTTERKDLMLVSGLGNYPVPLNHFPQLSFRFPPPLALSHMRMDPTRGTRFVDGCQLVPSREISLDIEDLTIPWSDLVIKERIGSGSFGTVHRADWHGSDVAVKILMEQDFHAERFKEFLWEVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKPGAREMLDEKRRLNMAYDVAKGMNYLHRCNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSTAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCKRLEIPRDLNTRVASLIEVCWANETWKRPSFSSIMESLRQLIKPSTPQPGSEDLSLVA 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9357152 9362578 - Conep13aG0124600.1 Cone13ag1213 451600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1213 814 CDD STKc_MAP3K-like 546 794 - -
Cone13ag1213 814 Pfam Ethylene-responsive protein kinase Le-CTR1 192 398 - -
Cone13ag1213 814 ProSiteProfiles Protein kinase domain profile. 540 798 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1213 814 FunFam Serine/threonine-protein kinase isoform 1 531 618 - -
Cone13ag1213 814 Gene3D Phosphorylase Kinase; domain 1 533 618 - -
Cone13ag1213 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 661 673 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1213 814 FunFam Serine/threonine-protein kinase CTR1 619 804 - -
Cone13ag1213 814 Pfam Protein tyrosine and serine/threonine kinase 541 794 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1213 814 SUPERFAMILY Protein kinase-like (PK-like) 524 794 IPR011009 -
Cone13ag1213 814 PANTHER SERINE-THREONINE PROTEIN KINASE 94 798 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone13ag1213 814 PRINTS Tyrosine kinase catalytic domain signature 614 627 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1213 814 PRINTS Tyrosine kinase catalytic domain signature 721 743 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1213 814 PRINTS Tyrosine kinase catalytic domain signature 765 787 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1213 814 PRINTS Tyrosine kinase catalytic domain signature 655 673 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1213 814 PRINTS Tyrosine kinase catalytic domain signature 702 712 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1213 814 Gene3D Transferase(Phosphotransferase) domain 1 619 806 - -
Cone13ag1213 814 SMART serkin_6 540 798 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1213 814 ProSitePatterns Protein kinases ATP-binding region signature. 546 567 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1213 Cone-Chr13:9357152 Cone7ag0865 Cone-Chr7:6610121 1.27E-199 dispersed
Cone10ag0186 Cone-Chr10:905888 Cone13ag1213 Cone-Chr13:9357152 0 wgd
Cone13ag1213 Cone-Chr13:9357152 Cone19ag1198 Cone-Chr19:8377949 0 wgd
Cone13ag1213 Cone-Chr13:9357152 Cone3ag0203 Cone-Chr3:1052705 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82046 PF03124 EXS 2.10E-89 CL0182 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1213 K14510 - mdm:103449391 1154.81