Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1220 ATGGCTTCCTGTGACGATGATTTCTCTCTCCTCAGCGACGACCACCACCACCAATCTCACTCCAATCACCACCGCATACCTTCGTCTCACCACCTCCACCAACAGTATACGCCTCATCGCTTCGCTTCCAGACCAAATTCGGTCCACACGCCCCCACCGCCACCACAACCGATCCTAGCCCCGCCCGGAAGTCCTAAGAAGATCTGCGCCGGTGAAGAAGAGGGGGAAGAGGACGATGGAGAAGACTATGGCGATGCTGCCTTCTGCTCAAATCCATATGACAATGGAACAGATCAGAGTAGGGTCGGGGCTGATGTTGACGTACGGAGCGAGAAGAGGAAGGATCATTCAAATCAGCTGGTCGAGGAAGGAGATCCGTACAGCTATAAGAAACAGAAACCCTCAGGAAGTGGTGGTGAGTACAGGAAGGATCGGGAAGAGTGGAGCGATGCGGCGATCGCGTGCCTTCTCGAAGCTTACACTGATAAGTTTACACAACTGAACAGAGGGAACCTGAGGGGGAGAGATTGGGAAGAGGTGGCAGCTACTGTGAGCGAGCGGTGTGAGAAGCAGGGTAAGAGCGTGGAGCAGTGTAAGAACAAGGTGGACAACTTGAAGAAGAGATATAAGCTGGAAAGGCATAGGATGATAAATGGTGGCGTTTCGGCCAGCCACTGGCCTTGGTTCAAGCAGATGGAGCAGATTGTTGGAAATTCATTGACGATGAAGGTCTCTTCTGATGACGATCGCAGTGTTGGTTCTTCAGGGAACACACCGAGACCATCTAAAAGATACGGGGTACCAACTCCAAATACTGCTAGTGAGATGAATAACATGAAACCCAAATCGACATCTAACCCAAGATGGCGGAGAGTTGTCTTCAAAATCAGTGGTACCGCACTTGCCGGGACTGTTCCTAACAACATTGACTCAAAGGTGGCATTGCTGATTGCTAGAGAAGTGGCAACGGCTTGTCGGCTTGGTGTGGAGGTAGCAATTGTTGTTGGAGGCCGAAACTTCTTTTGCGGAGATACATGGGTGACTTCAACAGGTTTAGATAGATGTACAGCTTACCAAATTGGTATGATGGCTACTGTGATGAACTCTATGCTACTGCAGTCAGTATTAGAGAAGATGGGAGTTCAGACTCGAGTCCAATCTGCATATGCACTGCAGGACATTGCTGAACCTTACAGTAGGCAACGTGCTATACGTCATCTTGAGAAAGGCAGAGTTGTTATATTTGGTGGAGTAGGTGTTGGCACTGGAAACCCTCTCTTTTCCACTGATACAGCTGCAGCTCTTCGAGCTTCAGAGATACATGCTGAGGCAGTTCTCAAAGGTACCAATGTTGACGGTGTGTATGATTGCAATTCCCAAGACAACAATTTTACATTCAAGCACATCTCCTTCAGGGAGTTAGTCTCCAGAGGCGCCACTGCCATGGACATGACAGCACTGACTTTCTGTGAGGAAAATAGTCTTCCGGTTGTTGTTTTTAATCTTCTTGAGCCTGGAAACATCTCAAAAGCGCTATGTGGAGATCAAGTTGGTACATTAATTGATCAAACCGGAAGACCTAACTAG 1587 48.65 MASCDDDFSLLSDDHHHQSHSNHHRIPSSHHLHQQYTPHRFASRPNSVHTPPPPPQPILAPPGSPKKICAGEEEGEEDDGEDYGDAAFCSNPYDNGTDQSRVGADVDVRSEKRKDHSNQLVEEGDPYSYKKQKPSGSGGEYRKDREEWSDAAIACLLEAYTDKFTQLNRGNLRGRDWEEVAATVSERCEKQGKSVEQCKNKVDNLKKRYKLERHRMINGGVSASHWPWFKQMEQIVGNSLTMKVSSDDDRSVGSSGNTPRPSKRYGVPTPNTASEMNNMKPKSTSNPRWRRVVFKISGTALAGTVPNNIDSKVALLIAREVATACRLGVEVAIVVGGRNFFCGDTWVTSTGLDRCTAYQIGMMATVMNSMLLQSVLEKMGVQTRVQSAYALQDIAEPYSRQRAIRHLEKGRVVIFGGVGVGTGNPLFSTDTAAALRASEIHAEAVLKGTNVDGVYDCNSQDNNFTFKHISFRELVSRGATAMDMTALTFCEENSLPVVVFNLLEPGNISKALCGDQVGTLIDQTGRPN 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9395991 9398895 - Conep13aG0125300.1 Cone13ag1220 451607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1220 528 Gene3D - 280 526 IPR036393 -
Cone13ag1220 528 MobiDBLite consensus disorder prediction 244 285 - -
Cone13ag1220 528 Coils Coil 188 215 - -
Cone13ag1220 528 MobiDBLite consensus disorder prediction 47 62 - -
Cone13ag1220 528 MobiDBLite consensus disorder prediction 104 129 - -
Cone13ag1220 528 MobiDBLite consensus disorder prediction 1 143 - -
Cone13ag1220 528 FunFam Aspartate/glutamate/uridylate kinase family protein 148 211 - -
Cone13ag1220 528 CDD AAK_UMPK-PyrH-Ec 290 522 IPR015963 GO:0005737(InterPro)|GO:0006221(InterPro)|GO:0033862(InterPro)
Cone13ag1220 528 Pfam Amino acid kinase family 291 501 IPR001048 -
Cone13ag1220 528 PANTHER URIDYLATE KINASE 145 525 - GO:0006225(PANTHER)|GO:0033862(PANTHER)
Cone13ag1220 528 Hamap Uridylate kinase [pyrH]. 287 522 IPR015963 GO:0005737(InterPro)|GO:0006221(InterPro)|GO:0033862(InterPro)
Cone13ag1220 528 Pfam Myb/SANT-like DNA-binding domain 145 235 IPR044822 -
Cone13ag1220 528 SUPERFAMILY Carbamate kinase-like 288 521 IPR036393 -
Cone13ag1220 528 FunFam Uridylate kinase isoform A 281 527 - -
Cone13ag1220 528 Gene3D - 148 211 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1220 Cone-Chr13:9395991 Cone6ag1292 Cone-Chr6:10353034 9.21E-82 dispersed
Cone13ag1220 Cone-Chr13:9395991 Cone19ag1207 Cone-Chr19:8420935 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44670 PF13639 zf-RING_2 8.20E-12 CL0229 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1220 - - - 0.0