Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1230 ATGCCGCTTTCATTGTCTCCGATCTTCGCCACTATCTTCGCGCTTGTCGTAACCGTGTCGGTGGTCTACTGCGGCTTTCCGGCCAACCTTCTTCCACTCGAGAGGGCCTTCCCACCGAGTCACCGTGTCGAAGTTGAAGTTCTCCGAGCTCGAGATAGAGTCCGCCACTCTCGAATCTTGCAAGGCTTTATCGGCGGCGTCGTCGACTTCTCAGTTGAAGGTTCCTCCGATCCTTATCTCGTCGGGTACGGGCTTTATTTTACAAAAGTTAAATTGGGCTCCCCACCAAGAGAATTCACCGTTCAGATCGATACTGGAAGTGACATACTGTGGGTAACCTGCAGTTCTTGCAGTGATTGTCCTCAAACTAGTGGACTTGGAGTTCAGCTCAATTTCTTTGATGCTGCCAGCTCATCATCTGCTGGGCTGATCCCCTGCTCAGACCCTATATGCACTTCTGCTTTACAAACCAGTGCAACTCAATGTGCATCTCAGAGTAACCAATGCAGTTACACGTTTCAATACGGTGATGGAAGTGGAACATCGGGTTATTATGTATCGGATTCATTGTATTTTGACATGATTCTTGGGCAATCCATGATTGCTAACTCCTCCACTCCCATTGTTTTTGGTACTTATCAATCTGGGGACTTGACAAAGATGGATAAAGCAGTAGATGGGATTTTTGGGTTTGGTCAAGGGGGTCTATCTGTAATATCACAATTGTCTTCTCGAGGGATAACTCCTAAAGTATTCTCTCATTGTTTGAAAGGAGATGGAAATGGAGGGGGTATATTGGTCCTTGGTGAGATCTTGGAGCCGAGCATTGTTTATAGTCCGCTTGTTCCCTCTCAGCCACACTATAATTTATATCTGGAGAGCATTTCTGTTAATGGACAACCTCTGCCAATTGATCCATCAGTGTTTGAAACATCAAGTAATCGAGGAACTATTGTAGACTCTGGTAACTGCTACTGTTTCTCAATCTGTGACTCCTATGATTTCAAAGGGAAACCAATGTTATCTAGTCACAACCAGTCTAGAAGGAATGTTTCCTCCAGTAAGCTTAAACTTTGCCGGGGGTGCATCCATGGTGCTAAAACCAGAAGAGTATCTTATACATCTTGGCTTCTATGA 1137 45.21 MPLSLSPIFATIFALVVTVSVVYCGFPANLLPLERAFPPSHRVEVEVLRARDRVRHSRILQGFIGGVVDFSVEGSSDPYLVGYGLYFTKVKLGSPPREFTVQIDTGSDILWVTCSSCSDCPQTSGLGVQLNFFDAASSSSAGLIPCSDPICTSALQTSATQCASQSNQCSYTFQYGDGSGTSGYYVSDSLYFDMILGQSMIANSSTPIVFGTYQSGDLTKMDKAVDGIFGFGQGGLSVISQLSSRGITPKVFSHCLKGDGNGGGILVLGEILEPSIVYSPLVPSQPHYNLYLESISVNGQPLPIDPSVFETSSNRGTIVDSGNCYCFSICDSYDFKGKPMLSSHNQSRRNVSSSKLKLCRGCIHGAKTRRVSYTSWLL 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9432965 9436303 - Conep13aG0126300.1 Cone13ag1230 451617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1230 378 Gene3D Acid Proteases 71 269 IPR021109 -
Cone13ag1230 378 SUPERFAMILY Acid proteases 81 334 IPR021109 -
Cone13ag1230 378 Pfam Xylanase inhibitor N-terminal 86 269 IPR032861 -
Cone13ag1230 378 ProSiteProfiles Peptidase family A1 domain profile. 86 378 IPR033121 -
Cone13ag1230 378 PANTHER ASPARTYL PROTEASES 31 327 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone13ag1230 378 Gene3D Acid Proteases 270 359 IPR021109 -
Cone13ag1230 378 Pfam Xylanase inhibitor C-terminal 287 359 IPR032799 -
Cone13ag1230 378 FunFam Aspartic proteinase-like protein 2 67 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1230 Cone-Chr13:9432965 Cone6ag0961 Cone-Chr6:5098242 2.15E-86 dispersed
Cone11ag1342 Cone-Chr11:9829868 Cone13ag1230 Cone-Chr13:9432965 4.81E-121 wgd
Cone13ag1230 Cone-Chr13:9432965 Cone18ag0237 Cone-Chr18:1158421 2.42E-126 wgd
Cone13ag1230 Cone-Chr13:9432965 Cone5ag1375 Cone-Chr5:8385138 1.20E-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1230 - - - 0.0