Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone13ag1232 | ATGTTCAAGTTTTGGGGATCTCAAGAGGAACAGGCTCAACCTCGGCCACAGGAATATCCTCCTCAACAGTCATGGTATCCTCCATCTGTAGCTGGTTCCCCTAGTTCTTCACGTCCGGTAACACCTAGTAGAACTTCCTCTGGAAACTTCAGTTCACACGGTTCTTCAGAGCGGCCACAGTCTCCTGCGCATGTTTCATCTGCTGAAGCTGTTGGTATAATCTCTGCTTTGAAGGACAAAGGTCCGGACGAGCTACGGAAGCTTTTGTCAGACAAAGATGCATACAATCAATTTTTACTTTCGCTGGATCAGATCAAAGTTCAAAACAATGTAAGAGACGAACTATGCAAGGAAACCCTGCAGCTTGCCAGAGAGAACATAGAAAAGGAACCCCGTATAATGGAACTTAGAAACCAGTGTAGAATAATTCGGACAACCGAGCTAGCTACTGCCCAAGAGAAACTTACTGAGCTCGAAAAGAAGAAAGAGGAGCTTTTAAAGTTATATTCACCTGCATCCCTGTTGCGTCGGCTTGAAGAATCGATGAATAAGACAGAGGAAGAGTCCGAGAATTTGCAGAAGCAGCTGCTTGACCGGGAGATAGAGCTGAGTGCATTCGTACAGATGTATAAGAAGCTTCGTGTAGAGTACCACAAGCGAGCTCTTATCCATCTGGCCGCTAAAACGTCTCTGGCTTGA | 699 | 45.78 | MFKFWGSQEEQAQPRPQEYPPQQSWYPPSVAGSPSSSRPVTPSRTSSGNFSSHGSSERPQSPAHVSSAEAVGIISALKDKGPDELRKLLSDKDAYNQFLLSLDQIKVQNNVRDELCKETLQLARENIEKEPRIMELRNQCRIIRTTELATAQEKLTELEKKKEELLKLYSPASLLRRLEESMNKTEEESENLQKQLLDREIELSAFVQMYKKLRVEYHKRALIHLAAKTSLA | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 9438678 | 9441134 | - | Conep13aG0126500.1 | Cone13ag1232 | 451619 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone13ag1232 | 232 | SUPERFAMILY | Endosomal sorting complex assembly domain | 166 | 220 | IPR037202 | - | |
| Cone13ag1232 | 232 | Coils | Coil | 175 | 202 | - | - | |
| Cone13ag1232 | 232 | MobiDBLite | consensus disorder prediction | 10 | 63 | - | - | |
| Cone13ag1232 | 232 | PANTHER | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37 | 12 | 231 | - | GO:0000813(PANTHER)|GO:0006612(PANTHER)|GO:0006623(PANTHER)|GO:0043162(PANTHER) | |
| Cone13ag1232 | 232 | Pfam | Modifier of rudimentary (Mod(r)) protein | 79 | 222 | IPR009851 | - | |
| Cone13ag1232 | 232 | ProSiteProfiles | VPS37 C-terminal domain profile. | 152 | 232 | IPR009851 | - | |
| Cone13ag1232 | 232 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - | |
| Cone13ag1232 | 232 | Coils | Coil | 148 | 168 | - | - | |
| Cone13ag1232 | 232 | Gene3D | Helix hairpin bin | 156 | 226 | IPR029012 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone10ag0198 | Cone-Chr10:987633 | Cone13ag1232 | Cone-Chr13:9438678 | 2.60E-73 | wgd | |
| Cone13ag1232 | Cone-Chr13:9438678 | Cone19ag1218 | Cone-Chr19:8468647 | 1.19E-136 | wgd | |
| Cone13ag1232 | Cone-Chr13:9438678 | Cone3ag0220 | Cone-Chr3:1161008 | 7.01E-17 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone13ag1232 | K12185 | - | rcu:8283950 | 306.219 |