Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1235 ATGAAACGAGAGTTAGCTTTCGCACTGGAGGTTCAATCTCAGCTCGGCGAGTCACTCGGTCGGACTCGGGGCAAGAGTCATGGTGAGTCAAAGGAGAGTAATCTTGTAGACGAAGCTTCACAGAATGCTAGCTCTAAATCTAAGAGGTTTAAAGGTTCTGTCGTGAACGGCGTGATTGTTTATACTAGAGGAAAAAAGCCTCGGATCAATAGCTTCTCTGAAAATGAGAAAAGTAGAAAGCTTGCAATCGAGCAAGCTCAAACTTTAACTCAAGTAAAGAAGCCTAAAATTGGAGCTGAAAAATCTCCAGCCGAAGTAGGAGGCCACAATGGTGCTTTGGTTGTAATTTCCGAAAAGGGAGAAATGGAGAATGATGTGCCAGAAAAGCCATTCAAGAGGTTTACGCGGAGGTCGTTAGTACCGGAAGTAAGGCCGCCTTCCTCTTTGAATGCATCGGAAATGAAAACTTCGAAAAGTAGTTCCTTGATTAAGAGGCCAGTGACAGTGAAGAAGCTGTTTGATACTGGTTTGCTTGAAGGGGTGCCCGTAATTTACATGGGTGTCCAGAAGGCATGTGATTATGGTCTTCGCGGCACGATTAAAGATGGTGGGATTTTATGTACATGTTCGTCCTGCGATGGACGCAGAGTCATTCCGCCTTCCAAATTTGAGATTCATGCTTGTAGACAATACAAACGAGCAGCACAGTATATATGCTTTGAAAATGGGAAGAGCTTGTTGGACCTGTTAAACAAATGTAGAGAAAGTCCTCTACATAAACTGGAGGCAACAATTCAGAGTGTAATTAATTCTACTCCGGAAGCACAAAGTTTCACATGTAGAAAGTGTAAAGGGGAATTTCCTTCATCATTTGTTGGACAGAATGAACCTTTATGTGATTCATGTGTCAACTCAAAAGTGTTAGAGAGTCCTCCAACTCTATCTTCTCTACATACACTGGAGGCCACAATTCAAAGTGTAATTAGTTCTACTCCAGAAGCTCAAAGTTTCACATGTATAAAGTGTAAAGGGAACTTTCCTTCAGCCTTTGTTGGACAAAATGAACCTTTATGTGATTCATGTGTGAAGTCAACAGTATTAGAGAGTCCTCCAACTGCAACGACCCCTCTCACTCCCGCACTTAGCAAGAGGGTTAGGTCAGCAGAGGTGATTTTGCCCTCAAAGTCCCCCACAACTGCACCAGTGCGGAGCGCTTCACAATGTAAAAGTAAATGGATGTTAAGAACAAAGTCATCAAAACGAGTTCTTGTTTCGAAGTCTTCCAAAAGTGCTCCAGTGCATATTCTACAACAAACTAAAAGTCCCGGAAAGATAAAGAAAAAGTTATCCAAACGGGTCTTGAAATCAAAGTCTTCCAAAAGTGCTACAAGACATGTATCTTTCCCAACGAAAATACAGTGGAAGATCACAAGAAAAGATCAGCGGTTACATAAGTTGGTTTTTGAGAAGTGTGGATTGCCTGATGGAACTGAAGTTGCATATTTTGCAAGAGGACAGAAATTGCTCCAAGGCTATAAAAAGGGTTCTGGTATTTTTTGTTACTGCTGCAATTGTGTGGTCAGTCCCTCACAATTTGAGGTTCATGCTGGTTGGTCTTCTCGTAAAAAGCCTTATGAATACATTTACATGTCAAATGGTGTGTCTCTTCATGAATTGGCAGTATCTCTGTCAAAAGGTCGTAGATATTCTGCCAGGGATAATGATGACCTATGCATCATTTGTCTAGATGGTGGCAATCTTTTGCTTTGTGATGGCTGCCCAAGGGCATTCCACAAAGAATGTGCATCACTATCAAGTATTCCTAAGGGTGATTGGTATTGTAAATTTTGCCAGAACATGTTCCAAAGGGAAAAGTTTGTTGAATATAATGAAAATGCTGTTGCTGCTGGAAGGGTTTCAGGAGTCGATCCTATTGAGGAGATAACCAGGCGATGTATTCGTATTGTAAAAAACATAGAAACTGAACTTAGTGGATGTGTATTATGCAGAGCTTGTGACTTTAGCAAATCCGGATTTGGCCCTCGCACAATTATACTTTGTGATCAGTGCGAGAAAGAATTTCATATCGGCTGTTTAAAGGATCACAAAATGGCATTTCTCAAGGAATTGCCAACAGGGAAGTGGTTTTGTAGCAAGGATTGCACTAGAATACATTCTGCTTTACAGAAGCTCCTAATTTCTGGAGCAGAAAAGCTTCCAGAGTCCCACCTGAATGTAATCAACAAGAAGCTTGAGGTGAAACAGTTAGAAATTGACAGTAATATTGATATTAGATGGAGTCTCATCAGTGGAAAAATCGCTTCACCCGAAACCCGTTCATTACTTTCAGAAGTTGTTGCCATCTTCCATGATTGCTTTGATCCAATAGTTGATGCAACTAGTGGACGTGACCTCATTCCGGCAATGGTTTATGGAAGGGATGTAGGAGGACAAGAGTTTGGGGGAATGTACTGTGCAATTTTAAGCATCAACTCATCTGTTGTATCAGCTGCAATGCTTCGAGTTTTTGGGCAAGAAATTGCAGAATTGCCCTTAGTTGCTACAAGCAATGGTAACCATGGCAAGGGCTACTTCCAAATATTGTTCTCCTGCATAGAGAAGCTCTTATCTTTCTTGAATGTCAAGAGCATAGTCTTACCTGCTGCTGAAGAAGCAGAATCCATTTGGACCGATAAATTCGGTTTCACGAAGATAAAACCAGATCAGCTAAGTAATTACAGAAGAAATTGCTGCCAGATGCTGACATTCAAAGGGACATCAATGCTTCAGAAAATCGTTCCCCCATGCCGGGTCCTCCATGGTGAATTGTGA 2832 41.49 MKRELAFALEVQSQLGESLGRTRGKSHGESKESNLVDEASQNASSKSKRFKGSVVNGVIVYTRGKKPRINSFSENEKSRKLAIEQAQTLTQVKKPKIGAEKSPAEVGGHNGALVVISEKGEMENDVPEKPFKRFTRRSLVPEVRPPSSLNASEMKTSKSSSLIKRPVTVKKLFDTGLLEGVPVIYMGVQKACDYGLRGTIKDGGILCTCSSCDGRRVIPPSKFEIHACRQYKRAAQYICFENGKSLLDLLNKCRESPLHKLEATIQSVINSTPEAQSFTCRKCKGEFPSSFVGQNEPLCDSCVNSKVLESPPTLSSLHTLEATIQSVISSTPEAQSFTCIKCKGNFPSAFVGQNEPLCDSCVKSTVLESPPTATTPLTPALSKRVRSAEVILPSKSPTTAPVRSASQCKSKWMLRTKSSKRVLVSKSSKSAPVHILQQTKSPGKIKKKLSKRVLKSKSSKSATRHVSFPTKIQWKITRKDQRLHKLVFEKCGLPDGTEVAYFARGQKLLQGYKKGSGIFCYCCNCVVSPSQFEVHAGWSSRKKPYEYIYMSNGVSLHELAVSLSKGRRYSARDNDDLCIICLDGGNLLLCDGCPRAFHKECASLSSIPKGDWYCKFCQNMFQREKFVEYNENAVAAGRVSGVDPIEEITRRCIRIVKNIETELSGCVLCRACDFSKSGFGPRTIILCDQCEKEFHIGCLKDHKMAFLKELPTGKWFCSKDCTRIHSALQKLLISGAEKLPESHLNVINKKLEVKQLEIDSNIDIRWSLISGKIASPETRSLLSEVVAIFHDCFDPIVDATSGRDLIPAMVYGRDVGGQEFGGMYCAILSINSSVVSAAMLRVFGQEIAELPLVATSNGNHGKGYFQILFSCIEKLLSFLNVKSIVLPAAEEAESIWTDKFGFTKIKPDQLSNYRRNCCQMLTFKGTSMLQKIVPPCRVLHGEL 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9451966 9457846 + Conep13aG0126800.1 Cone13ag1235 451622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1235 943 PANTHER AUTOIMMUNE REGULATOR 316 936 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Cone13ag1235 943 CDD PHD1_AIRE 577 617 - -
Cone13ag1235 943 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 821 907 IPR016181 -
Cone13ag1235 943 MobiDBLite consensus disorder prediction 16 48 - -
Cone13ag1235 943 Pfam Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1 575 618 - -
Cone13ag1235 943 SMART PHD_3 577 618 IPR001965 -
Cone13ag1235 943 SMART PHD_3 668 722 IPR001965 -
Cone13ag1235 943 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 724 IPR013083 -
Cone13ag1235 943 ProSiteProfiles Zinc finger PHD-type profile. 575 620 IPR019787 -
Cone13ag1235 943 ProSitePatterns Zinc finger PHD-type signature. 578 617 IPR019786 -
Cone13ag1235 943 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 564 650 IPR013083 -
Cone13ag1235 943 Pfam Tify domain binding domain 511 561 IPR032308 -
Cone13ag1235 943 Pfam Tify domain binding domain 198 253 IPR032308 -
Cone13ag1235 943 SUPERFAMILY FYVE/PHD zinc finger 570 622 IPR011011 -
Cone13ag1235 943 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 564 641 - -
Cone13ag1235 943 SUPERFAMILY FYVE/PHD zinc finger 661 721 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1235 Cone-Chr13:9451966 Cone19ag1312 Cone-Chr19:8830190 1.22E-161 dispersed
Cone1ag0503 Cone-Chr1:4882020 Cone13ag1235 Cone-Chr13:9451966 7.54E-221 wgd
Cone13ag1235 Cone-Chr13:9451966 Cone5ag1271 Cone-Chr5:6081321 1.98E-220 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44672 PF13911 AhpC-TSA_2 2.90E-11 CL0172 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1235 - - - 0.0