Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1235 ATGAAACGAGAGTTAGCTTTCGCACTGGAGGTTCAATCTCAGCTCGGCGAGTCACTCGGTCGGACTCGGGGCAAGAGTCATGGTGAGTCAAAGGAGAGTAATCTTGTAGACGAAGCTTCACAGAATGCTAGCTCTAAATCTAAGAGGTTTAAAGGTTCTGTCGTGAACGGCGTGATTGTTTATACTAGAGGAAAAAAGCCTCGGATCAATAGCTTCTCTGAAAATGAGAAAAGTAGAAAGCTTGCAATCGAGCAAGCTCAAACTTTAACTCAAGTAAAGAAGCCTAAAATTGGAGCTGAAAAATCTCCAGCCGAAGTAGGAGGCCACAATGGTGCTTTGGTTGTAATTTCCGAAAAGGGAGAAATGGAGAATGATGTGCCAGAAAAGCCATTCAAGAGGTTTACGCGGAGGTCGTTAGTACCGGAAGTAAGGCCGCCTTCCTCTTTGAATGCATCGGAAATGAAAACTTCGAAAAGTAGTTCCTTGATTAAGAGGCCAGTGACAGTGAAGAAGCTGTTTGATACTGGTTTGCTTGAAGGGGTGCCCGTAATTTACATGGGTGTCCAGAAGGCATGTGATTATGGTCTTCGCGGCACGATTAAAGATGGTGGGATTTTATGTACATGTTCGTCCTGCGATGGACGCAGAGTCATTCCGCCTTCCAAATTTGAGATTCATGCTTGTAGACAATACAAACGAGCAGCACAGTATATATGCTTTGAAAATGGGAAGAGCTTGTTGGACCTGTTAAACAAATGTAGAGAAAGTCCTCTACATAAACTGGAGGCAACAATTCAGAGTGTAATTAATTCTACTCCGGAAGCACAAAGTTTCACATGTAGAAAGTGTAAAGGGGAATTTCCTTCATCATTTGTTGGACAGAATGAACCTTTATGTGATTCATGTGTCAACTCAAAAGTGTTAGAGAGTCCTCCAACTCTATCTTCTCTACATACACTGGAGGCCACAATTCAAAGTGTAATTAGTTCTACTCCAGAAGCTCAAAGTTTCACATGTATAAAGTGTAAAGGGAACTTTCCTTCAGCCTTTGTTGGACAAAATGAACCTTTATGTGATTCATGTGTGAAGTCAACAGTATTAGAGAGTCCTCCAACTGCAACGACCCCTCTCACTCCCGCACTTAGCAAGAGGGTTAGGTCAGCAGAGGTGATTTTGCCCTCAAAGTCCCCCACAACTGCACCAGTGCGGAGCGCTTCACAATGTAAAAGTAAATGGATGTTAAGAACAAAGTCATCAAAACGAGTTCTTGTTTCGAAGTCTTCCAAAAGTGCTCCAGTGCATATTCTACAACAAACTAAAAGTCCCGGAAAGATAAAGAAAAAGTTATCCAAACGGGTCTTGAAATCAAAGTCTTCCAAAAGTGCTACAAGACATGTATCTTTCCCAACGAAAATACAGTGGAAGATCACAAGAAAAGATCAGCGGTTACATAAGTTGGTTTTTGAGAAGTGTGGATTGCCTGATGGAACTGAAGTTGCATATTTTGCAAGAGGACAGAAATTGCTCCAAGGCTATAAAAAGGGTTCTGGTATTTTTTGTTACTGCTGCAATTGTGTGGTCAGTCCCTCACAATTTGAGGTTCATGCTGGTTGGTCTTCTCGTAAAAAGCCTTATGAATACATTTACATGTCAAATGGTGTGTCTCTTCATGAATTGGCAGTATCTCTGTCAAAAGGTCGTAGATATTCTGCCAGGGATAATGATGACCTATGCATCATTTGTCTAGATGGTGGCAATCTTTTGCTTTGTGATGGCTGCCCAAGGGCATTCCACAAAGAATGTGCATCACTATCAAGTATTCCTAAGGGTGATTGGTATTGTAAATTTTGCCAGAACATGTTCCAAAGGGAAAAGTTTGTTGAATATAATGAAAATGCTGTTGCTGCTGGAAGGGTTTCAGGAGTCGATCCTATTGAGGAGATAACCAGGCGATGTATTCGTATTGTAAAAAACATAGAAACTGAACTTAGTGGATGTGTATTATGCAGAGCTTGTGACTTTAGCAAATCCGGATTTGGCCCTCGCACAATTATACTTTGTGATCAGTGCGAGAAAGAATTTCATATCGGCTGTTTAAAGGATCACAAAATGGCATTTCTCAAGGAATTGCCAACAGGGAAGTGGTTTTGTAGCAAGGATTGCACTAGAATACATTCTGCTTTACAGAAGCTCCTAATTTCTGGAGCAGAAAAGCTTCCAGAGTCCCACCTGAATGTAATCAACAAGAAGCTTGAGGTGAAACAGTTAGAAATTGACAGTAATATTGATATTAGATGGAGTCTCATCAGTGGAAAAATCGCTTCACCCGAAACCCGTTCATTACTTTCAGAAGTTGTTGCCATCTTCCATGATTGCTTTGATCCAATAGTTGATGCAACTAGTGGACGTGACCTCATTCCGGCAATGGTTTATGGAAGGGATGTAGGAGGACAAGAGTTTGGGGGAATGTACTGTGCAATTTTAAGCATCAACTCATCTGTTGTATCAGCTGCAATGCTTCGAGTTTTTGGGCAAGAAATTGCAGAATTGCCCTTAGTTGCTACAAGCAATGGTAACCATGGCAAGGGCTACTTCCAAATATTGTTCTCCTGCATAGAGAAGCTCTTATCTTTCTTGAATGTCAAGAGCATAGTCTTACCTGCTGCTGAAGAAGCAGAATCCATTTGGACCGATAAATTCGGTTTCACGAAGATAAAACCAGATCAGCTAAGTAATTACAGAAGAAATTGCTGCCAGATGCTGACATTCAAAGGGACATCAATGCTTCAGAAAATCGTTCCCCCATGCCGGGTCCTCCATGGTGAATTGTGA 2832 41.49 MKRELAFALEVQSQLGESLGRTRGKSHGESKESNLVDEASQNASSKSKRFKGSVVNGVIVYTRGKKPRINSFSENEKSRKLAIEQAQTLTQVKKPKIGAEKSPAEVGGHNGALVVISEKGEMENDVPEKPFKRFTRRSLVPEVRPPSSLNASEMKTSKSSSLIKRPVTVKKLFDTGLLEGVPVIYMGVQKACDYGLRGTIKDGGILCTCSSCDGRRVIPPSKFEIHACRQYKRAAQYICFENGKSLLDLLNKCRESPLHKLEATIQSVINSTPEAQSFTCRKCKGEFPSSFVGQNEPLCDSCVNSKVLESPPTLSSLHTLEATIQSVISSTPEAQSFTCIKCKGNFPSAFVGQNEPLCDSCVKSTVLESPPTATTPLTPALSKRVRSAEVILPSKSPTTAPVRSASQCKSKWMLRTKSSKRVLVSKSSKSAPVHILQQTKSPGKIKKKLSKRVLKSKSSKSATRHVSFPTKIQWKITRKDQRLHKLVFEKCGLPDGTEVAYFARGQKLLQGYKKGSGIFCYCCNCVVSPSQFEVHAGWSSRKKPYEYIYMSNGVSLHELAVSLSKGRRYSARDNDDLCIICLDGGNLLLCDGCPRAFHKECASLSSIPKGDWYCKFCQNMFQREKFVEYNENAVAAGRVSGVDPIEEITRRCIRIVKNIETELSGCVLCRACDFSKSGFGPRTIILCDQCEKEFHIGCLKDHKMAFLKELPTGKWFCSKDCTRIHSALQKLLISGAEKLPESHLNVINKKLEVKQLEIDSNIDIRWSLISGKIASPETRSLLSEVVAIFHDCFDPIVDATSGRDLIPAMVYGRDVGGQEFGGMYCAILSINSSVVSAAMLRVFGQEIAELPLVATSNGNHGKGYFQILFSCIEKLLSFLNVKSIVLPAAEEAESIWTDKFGFTKIKPDQLSNYRRNCCQMLTFKGTSMLQKIVPPCRVLHGEL 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9451966 9457846 + Conep13aG0126800.1 Cone13ag1235 451622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1235 943 PANTHER AUTOIMMUNE REGULATOR 316 936 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Cone13ag1235 943 CDD PHD1_AIRE 577 617 - -
Cone13ag1235 943 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 821 907 IPR016181 -
Cone13ag1235 943 MobiDBLite consensus disorder prediction 16 48 - -
Cone13ag1235 943 Pfam Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1 575 618 - -
Cone13ag1235 943 SMART PHD_3 577 618 IPR001965 -
Cone13ag1235 943 SMART PHD_3 668 722 IPR001965 -
Cone13ag1235 943 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 724 IPR013083 -
Cone13ag1235 943 ProSiteProfiles Zinc finger PHD-type profile. 575 620 IPR019787 -
Cone13ag1235 943 ProSitePatterns Zinc finger PHD-type signature. 578 617 IPR019786 -
Cone13ag1235 943 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 564 650 IPR013083 -
Cone13ag1235 943 Pfam Tify domain binding domain 511 561 IPR032308 -
Cone13ag1235 943 Pfam Tify domain binding domain 198 253 IPR032308 -
Cone13ag1235 943 SUPERFAMILY FYVE/PHD zinc finger 570 622 IPR011011 -
Cone13ag1235 943 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 564 641 - -
Cone13ag1235 943 SUPERFAMILY FYVE/PHD zinc finger 661 721 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1235 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1235 Cone-Chr13:9451966 Cone19ag1312 Cone-Chr19:8830190 1.22E-161 dispersed
Cone1ag0503 Cone-Chr1:4882020 Cone13ag1235 Cone-Chr13:9451966 7.54E-221 wgd
Cone13ag1235 Cone-Chr13:9451966 Cone5ag1271 Cone-Chr5:6081321 1.98E-220 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag1235 . 158 939 PHD Transcription Factor Family AT2G36720 50.8 5.0e-224 775.4
Cone19ag1312 . 5 872 PHD Transcription Factor Family AT3G53680 56.5 2.2e-265 912.5
Cone13ag1327 . 1 864 PHD Transcription Factor Family AT3G53680 55.0 3.3e-261 898.7
Cone3ag0322 . 378 507 PHD Transcription Factor Family AT3G53680 56.2 2.6e-40 164.9
Cone5ag0283 . 418 547 PHD Transcription Factor Family AT3G53680 52.3 2.3e-36 151.8
Cone19ag0716 . 11 651 PHD Transcription Factor Family AT5G22260 51.6 1.1e-185 647.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004207 2 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44672 PF13911 AhpC-TSA_2 2.90E-11 CL0172 Cone TR