Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1236 ATGACCAGATTCAAACCCACCCTGTCATTTTTCCTCTCTGCTTTTTCCATTGCACTCCTCTCTGCCATTATCGCTCTCTTCTTCACCTTCCCTCCTCCTTCAACACTGACTGATCATCATCTCACCATTTGTTATGACCTTAATCAAGATAGTTTCCAGCTTGCCATTCTCAAGAAGCTTCTAAAACAGAGTGGGGTTGAGTATCTCTGCTCTGTCTTAACTAGAAGAAGGAGCCAATGCGATACAACTACTAAGTGGAAGCCCTCTTCTTCTTCTTCTAAGCTGATGTCTGATTATAACGTGGGCCTCACTATCACTGTTGATTCAAAGGGCCGTGCTGATTTTACAAGTATTCAGAAAGCTGTAGATGCTGTTCCTCTCTTTAGCAGCTCTAAAACACTGATCGTAATCGATGCTGGTACTTACAGGGAAAAGGTGTTGGTTCAAGAAAACAAGACTAATTTGATAATACAAGGACAAGGATATTTAAACACAGCAATAGAATGGAATGACACTGCTAATTCAACTGGAGGGACTGCTGCTACCCCTTCTTTTTCCATCTTTGCTCCTAATTTCATTGCATTCAACATTAGCTTTAAGAACACGGCTCCTTCGCCGTATCCGGGAGAAGCAGGAGCTCAAGCAGTGGCGCTTCGTATTGCAGGAGATCAAGCTGCATTTTACGGATGCGGGTTTTATGGAGCACAAGACACACTCTATGACGATCATGGTAGACATTATTTCGAGCAATGTTTCATCGAAGGTTCTATTGATTTCATCTTCGGAAACGCAAGATCACTTTATGAGGGTTGCCATATACATTCAATAGCAAAAGAAGGGTCAGGAGGGGTGAGTGGGGCCATAACGGCTCACGGGAGTCAATCATCGAGCGAACAATCCGGGTTCTCATTCGTGGGGTGCACCGTCACTGGCTCGGGCAAAGTCTGGCTCGGTCGTGCGTGGGGTCCTTATGCCACTGTTGTCTTCTCCAAGACTTACATGTCTGATATCGTTTCTCCCGACGGATGGAATGATTGGAGAGACCCCTCTCGTGATCAGACGATCTACTTTGGAGAGTATGACTGCTATGGACCAGGAGCAAACTACACAGATAGGGTTTCATATGGGAAACAGCTAAAGCAATCTGAAGCAGCTCCTTTTTTAAGTGTCTCATACATTGATGGAGATGGATGGCTAGTTCATCAGACTATTACACATGAACAAAATTTTACTCCTACTATTCTTCCGTTGTTCAATATTTGA 1263 44.1 MTRFKPTLSFFLSAFSIALLSAIIALFFTFPPPSTLTDHHLTICYDLNQDSFQLAILKKLLKQSGVEYLCSVLTRRRSQCDTTTKWKPSSSSSKLMSDYNVGLTITVDSKGRADFTSIQKAVDAVPLFSSSKTLIVIDAGTYREKVLVQENKTNLIIQGQGYLNTAIEWNDTANSTGGTAATPSFSIFAPNFIAFNISFKNTAPSPYPGEAGAQAVALRIAGDQAAFYGCGFYGAQDTLYDDHGRHYFEQCFIEGSIDFIFGNARSLYEGCHIHSIAKEGSGGVSGAITAHGSQSSSEQSGFSFVGCTVTGSGKVWLGRAWGPYATVVFSKTYMSDIVSPDGWNDWRDPSRDQTIYFGEYDCYGPGANYTDRVSYGKQLKQSEAAPFLSVSYIDGDGWLVHQTITHEQNFTPTILPLFNI 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9458454 9460150 + Conep13aG0126900.1 Cone13ag1236 451623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1236 420 SUPERFAMILY Pectin lyase-like 102 400 IPR011050 -
Cone13ag1236 420 FunFam Pectinesterase 99 404 - -
Cone13ag1236 420 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 90 399 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cone13ag1236 420 ProSitePatterns Pectinesterase signature 2. 253 262 IPR033131 -
Cone13ag1236 420 Gene3D - 99 410 IPR012334 -
Cone13ag1236 420 Pfam Pectinesterase 105 396 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1236 Cone-Chr13:9458454 Cone7ag1167 Cone-Chr7:8690853 5.21E-104 dispersed
Cone15ag0946 Cone-Chr15:7515725 Cone13ag1236 Cone-Chr13:9458454 3.22E-116 transposed
Cone13ag1236 Cone-Chr13:9458454 Cone5ag0802 Cone-Chr5:3450694 3.71E-43 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1236 - - - 0.0