Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1260 ATGGAGTCAAACGCTCACTTAACCGGAACGACATCGTCATCGTCTTCGTTGAAGAGTTTCTGCGTGAGTGGTAGCGATCATCATCGCGAGGATCCCCTGAGCTGGGGAGCGGCGGCGGAGTCGATGGCGGGGAGTCATTTTGAGGAGGTGAAGAGGATGGTGAGCGAGTACCGTAAGCCGGTGGTGAAGCTCGGCGGCGAGACTCTGACCATTGCTCAGGTGGCGGCGATTTCAGCTGGTGTGAAGACGACGGTGGAGGTGGAGCTGTCGGAGTCATCTAGGGCTGGAGTTCAGGCGAGTAGTGATTGGGTGATGGAGAGTATGAATAAAGGAACGGACAGTTATGGCGTTACCACCGGCTTTGGTGCGACGTCGCATCGGAGAACCAAACAGGGCGGTGCTCTTCAGACGGAGCTCATCCGATTTCTCAATGCTGGAATATTCGGAAACGGAACGGAATCATGTCACACGCTACCACAGTCGGCCGCGAGAGCAGCCATGCTGGTCCGGATCAACACTCTTCTTCAAGGATATTCCGGCATCAGATTCCAAATCCTAGAAGCCATGGCCAAATTACTCAACCACAACATCACTCCAGTTCTACCACTACGTGGCACGATCTCAGCTTCCGGCGATCTCGTTCCTCTCTCTTACATAGCTGGACTACTCACAGGCCGCCCCAACTCCAAAGCCATTGGCCCTGAAGGTGAGACCCTCAATGCCAAAGAAGCATTCAACAAAGCCGGGATCGAATCTGGGTTTTTTGAATTACAGCCGAAAGAAGGCCTTGCTCTTGTCAACGGCACTGCAGTTGGTTCCGCATTAGCTTCTATTGTTCTTTACGAGGCGAACATTCTTGCCATTTTGTCGGAACTGTTATCGGCCGTTTTTGCTGAAGTGATGCAGGGTAAACCTGAATTTACAGATCACTTGACGCATAAATTGAAGCACCATCCTGGCCAGATTGAAGCTGCAGCAATAATGGAACATATTTTGGATGGAAGTTCTTATGTGAAAGCGGCTAAGAAATTACACGAGATTGATCCTTTGCAAAAGCCAAAACAGGACCGATATGCCCTCCGAACTTCACCACAATGGCTCGGTCCTCAAATCGAAGTAATTCGCTATTCAACCAAGTCGATCGAGAGAGAGATTAACTCGGTTAATGATAACCCTCTGATTGATGTTTCTAGAAACAAGGCCTTACATGGCGGAAACTTCCAAGGAACCCCAATTGGAGTTTCCATGGACAATACCCGGTTAGCTATAGCTGCAATTGGAAAACTCATGTTTGCTCAATTTTCCGAGCTTGTTAACGATTTTTACAACAATGGGTTGCCTTCAAATCTCTCAGGAGGTAGAAACCCAAGTTTGGATTATGGTTTCAAAGGTGCGGAAATAGCCATGGCTTCTTACTGTTCCGAGCTTCAGTATCTAGCCAATCCTGTTACGAGCCATGTCCAAAGTGCCGAGCAGCATAATCAAGATGTGAACTCGTTGGGACTAATTTCTTCGAGAAAAACAGCTGAAGCCGTTGATATCTTAATGCTGATGTCATCATCATTTTTACTAGCAATATGCCAAGCTATTGACTTGAGGCATTTGGAGGAGAACTTGAGAAACACTGTCAAGAACACGGTGAGCCAGGTGGCTAAGAGGGTTCTAACCACCGGTTCCAATGGAGAGCTTCACCCATCTAGATTCTGTGAGAAGGATCTGCTCAAAGTGGTCGATAGAGAGTACGTCTTTGCATATATTGATGACCCTTGCTTGGCTACATACCCTTTGATGCAAAAGCTTAGACAAGTGCTAGTGGAACATGCTTTGACAAATGGAGAAGGCGAGAAGAATGCAAGCACTTCAATCTTCCAAAAGATAGGGGTGTTTGAGGAAGAGCTCAAGGCTATTTTGCCTAAGGAAGTGGAGAGTGCCAGGGTGGCGCTTGAGAGCGGTAATGCAGCGATTCCGAACCAGATTAAGGAGTGCCGGTCCTATCCATTGTATAAGTTTGTTCGAGAGGAGTTGGGTACGAGGTTGCTTACGGGCGAGAAGGTGGTATCGCCCGGTGAAGAGTGTGATAAGGTGTTTGTTGCTTTGTGTGAGGGTAAGCTCATTGATCCTATTCTTGATTGCTTGAAGGAGTGGAATGGTGCGCCTATTCCTCTTCATTAG 2172 48.02 MESNAHLTGTTSSSSSLKSFCVSGSDHHREDPLSWGAAAESMAGSHFEEVKRMVSEYRKPVVKLGGETLTIAQVAAISAGVKTTVEVELSESSRAGVQASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQTELIRFLNAGIFGNGTESCHTLPQSAARAAMLVRINTLLQGYSGIRFQILEAMAKLLNHNITPVLPLRGTISASGDLVPLSYIAGLLTGRPNSKAIGPEGETLNAKEAFNKAGIESGFFELQPKEGLALVNGTAVGSALASIVLYEANILAILSELLSAVFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRYSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAVDILMLMSSSFLLAICQAIDLRHLEENLRNTVKNTVSQVAKRVLTTGSNGELHPSRFCEKDLLKVVDREYVFAYIDDPCLATYPLMQKLRQVLVEHALTNGEGEKNASTSIFQKIGVFEEELKAILPKEVESARVALESGNAAIPNQIKECRSYPLYKFVREELGTRLLTGEKVVSPGEECDKVFVALCEGKLIDPILDCLKEWNGAPIPLH 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9546345 9549051 - Conep13aG0129300.1 Cone13ag1260 451647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1260 723 FunFam Phenylalanine ammonia-lyase 23 269 - -
Cone13ag1260 723 Gene3D Fumarase/aspartase (Central domain) 270 718 - -
Cone13ag1260 723 SUPERFAMILY L-aspartase-like 30 722 IPR008948 GO:0003824(InterPro)
Cone13ag1260 723 Gene3D - 22 269 IPR024083 -
Cone13ag1260 723 NCBIfam phenylalanine ammonia-lyase 31 713 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cone13ag1260 723 CDD PAL-HAL 67 533 IPR001106 -
Cone13ag1260 723 PANTHER HISTIDINE AMMONIA-LYASE 27 722 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cone13ag1260 723 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 205 221 IPR022313 GO:0016841(InterPro)
Cone13ag1260 723 FunFam Phenylalanine ammonia-lyase 536 657 - -
Cone13ag1260 723 MobiDBLite consensus disorder prediction 1 22 - -
Cone13ag1260 723 FunFam Phenylalanine ammonia-lyase 270 585 - -
Cone13ag1260 723 MobiDBLite consensus disorder prediction 1 23 - -
Cone13ag1260 723 Gene3D - 536 657 IPR023144 -
Cone13ag1260 723 Pfam Aromatic amino acid lyase 69 547 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0757 Cone-Chr7:4676806 Cone13ag1260 Cone-Chr13:9546345 2.47E-295 transposed
Cone1ag1357 Cone-Chr1:56574402 Cone13ag1260 Cone-Chr13:9546345 0 wgd
Cone11ag1308 Cone-Chr11:9664209 Cone13ag1260 Cone-Chr13:9546345 2.21E-127 wgd
Cone13ag1260 Cone-Chr13:9546345 Cone18ag0271 Cone-Chr18:1311305 0 wgd
Cone13ag1260 Cone-Chr13:9546345 Cone19ag1247 Cone-Chr19:8569861 0 wgd
Cone13ag1260 Cone-Chr13:9546345 Cone5ag0346 Cone-Chr5:1476230 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1260 K10775 - rcu:8284514 1222.99