Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1264 ATGATAACATTTATGGAAACAAAAGAGAAAGTAAAGGAGGTGGAGAAATGCTTAGATCCTCAATTATGGCATGCTTGTGCTGGAGGAATGGTTCAAACGCCATCACTAAACAGCAAGGTCTTCTACTTCCCTCAAGGCCACGCCGAGCACGCCTGTGGGCCCGTTGATTTTCAGAATTGCCCAAGAATCCCCCCATATGTTCTCTGTAGAGTTTCTTCAGTCAAGTTCATGGCTGATCCTGAAACTGATGAGGTTTTTGCCAAATTCAGCCTCATACCTTCTAGGACTAACAAACTGGACCTTGAAGATGATGATGATGATGGAATGGGTGGGCTTAACGGGTCTGAATCTCAAGATAGACCGGCCTCATTCGCAAAGGCATTGACTCAATCAGATGCAAACAATGGTGGAGGTTTCTCTGTTCCTCGTTATTGTGCAGAAACGATTTTTCCCAGGTTGGATTATACAGCCGAGCCTCCTGTCCAGACAATACTTGCCAAGGATGTTCATGGGGAGACATGGAAATTCAGACATATATATAGGGGGACACCAAGAAGGCATCTTTTAACAACGGGATGGAGTACTTTTGTGAACCAGAAGAAGCTTGTTGCTGGTGATTCGATCGTCTTCTTGAGGGCTGAAAATGGCAATCTCTGTATTGGAATTCGTCGTGCGAAAAGGGGGGTTGGAGGTGGGCCCGAGTCTTCATCTGGGTGGAATCCAGCTGGCGGAAATTATACCATGCCTTATGGAGGTTTTACATCGTTTTTAAGGGAGGATGAGATTAAATTAATGAGGAATGGTACTAATGTTAATGGGGTGAGCTCTAATGGGGGTGTCATGGGGAAGGGGAAAGTGAGGCCTGAATCTGTTATTGAGGCGGCTACTCTTGCTGCTAAAGGGCAGCCATTTGGAGTCATTTACTATCCTCGAGCTAGTACACCAGAATTTTGTGTTAAGGCCTCTTTGGTGAAAACGGCATTAAAAATTCAGTGGTGCTCAGGAATGAGGTTCAAGATGGCGTTTGAAACAGAGGATTGTTCAAGGATAAGCTGGTTCATGGGAACCATCTCTTCTGTTCAAGTTGCTGATCCTATTCTCTGGCGTGAGTCACCTTGGAGGCTTCTCCAGGTTACATGGGATGAGCCAGATTTACTGCAGAATGTAAAACGCGTAAGCCCATGGCTAGTGGAATTAGTATCAAACATGCCCACCATTCATATGTCCCCTTTCTTACCCCCAAGGAAAAAATTGAGATTGCTACAACACCCAGAATTCCCCCTAGATGGCCCACTTTCCATTGCGGGCTTTACCGGAAACCTCCTTGTTGGCCCCACCTCCACCACCAGCCCATTCGGTTGTCTACCCGACAACACCCCTGCTGGCATGCAGGGAGCCAGGCATGCTCACCATGGTCTATCCTTATCAGATCTGCACCTCAATAAACTGCAGTCGGGTTTATTCTCGGTTAATTACCGTCCACAGGATCATTCTTCTACACCCACTAGATTATCTAACAACTCACTGATTCAAAAGCGGCCTAGCATGAGTACTGAAGATTTATCTTGCGTGTTAACCATAGCTTGTTCTACAGAAATTCCAAAGAAAACTGATAATCTAAAGACACCACCCAGGCTTGTACTCTTTGGTCAGCCTATACTAACCGAGCAGCAGATATATAGGAGCTGCTCAGGTACTCTTCAGCAAGAATCGGGGTCAAACATAGAGAAGACGGATGTAGTAGGTCATTCTCTTGATCTTTCATTGGTCGAATCTTACGATGAATTGCAAGGGAAATTAGTGGATATGTGTGGGAGAGATAACCCACGAGACCTCAAACCATGTAATGTACCGTGA 1857 45.61 MITFMETKEKVKEVEKCLDPQLWHACAGGMVQTPSLNSKVFYFPQGHAEHACGPVDFQNCPRIPPYVLCRVSSVKFMADPETDEVFAKFSLIPSRTNKLDLEDDDDDGMGGLNGSESQDRPASFAKALTQSDANNGGGFSVPRYCAETIFPRLDYTAEPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAENGNLCIGIRRAKRGVGGGPESSSGWNPAGGNYTMPYGGFTSFLREDEIKLMRNGTNVNGVSSNGGVMGKGKVRPESVIEAATLAAKGQPFGVIYYPRASTPEFCVKASLVKTALKIQWCSGMRFKMAFETEDCSRISWFMGTISSVQVADPILWRESPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPTIHMSPFLPPRKKLRLLQHPEFPLDGPLSIAGFTGNLLVGPTSTTSPFGCLPDNTPAGMQGARHAHHGLSLSDLHLNKLQSGLFSVNYRPQDHSSTPTRLSNNSLIQKRPSMSTEDLSCVLTIACSTEIPKKTDNLKTPPRLVLFGQPILTEQQIYRSCSGTLQQESGSNIEKTDVVGHSLDLSLVESYDELQGKLVDMCGRDNPRDLKPCNVP 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9569338 9572609 + Conep13aG0129700.1 Cone13ag1264 451651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1264 618 Pfam B3 DNA binding domain 124 225 IPR003340 GO:0003677(InterPro)
Cone13ag1264 618 Gene3D - 122 226 IPR015300 -
Cone13ag1264 618 MobiDBLite consensus disorder prediction 100 123 - -
Cone13ag1264 618 FunFam Auxin response factor 332 405 - -
Cone13ag1264 618 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 606 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone13ag1264 618 CDD B3_DNA 123 224 IPR003340 GO:0003677(InterPro)
Cone13ag1264 618 SMART B3_2 124 226 IPR003340 GO:0003677(InterPro)
Cone13ag1264 618 SUPERFAMILY DNA-binding pseudobarrel domain 117 229 IPR015300 -
Cone13ag1264 618 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677(InterPro)
Cone13ag1264 618 FunFam Auxin response factor 122 226 - -
Cone13ag1264 618 Pfam Auxin response factor 294 377 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone13ag1264 618 Gene3D - 331 405 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1059 Cone-Chr11:8336690 Cone13ag1264 Cone-Chr13:9569338 7.18E-181 dispersed
Cone13ag1264 Cone-Chr13:9569338 Cone1ag0736 Cone-Chr1:6827721 3.91E-212 dispersed
Cone10ag0249 Cone-Chr10:1202879 Cone13ag1264 Cone-Chr13:9569338 1.53E-229 wgd
Cone13ag1264 Cone-Chr13:9569338 Cone18ag0519 Cone-Chr18:2547457 5.32E-184 wgd
Cone13ag1264 Cone-Chr13:9569338 Cone19ag1251 Cone-Chr19:8592477 0 wgd
Cone13ag1264 Cone-Chr13:9569338 Cone3ag0278 Cone-Chr3:1451499 6.89E-246 wgd
Cone13ag1264 Cone-Chr13:9569338 Cone5ag1237 Cone-Chr5:5735524 4.85E-226 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44675 PF03009 GDPD 5.30E-65 CL0384 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1264 K14486 - mdm:103450052 872.078