Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1268 ATGAAGTACCATTTTCCTTTCTTCAGCTGCTGTTCTTCCTCCTCATCAACAACAGCTGTGATCAACAGCCCCCATGGGCAAAACCATGATAGTTTTCGTGTATTCTCTTATAATGAACTTAAACATGCAACCCATAACTTCCATTCGTCAAATAAAGTTGGTGAAGGTGGATTTGGCTCTGTTTATAAGGGTCGGCTTAAAGATGGAAGTATTGTAGCTGTGAAAGTGCTTTCAATTGAGATAGAAACGATGAGGGGGGAGAAAGAATTTGTGGCTGAATTAGCTGCACTCTCGAACATCAAGCATGAAAACCTTGTCTCCCTTAAAGGATGTTGTGTCGATGGAACTAATAGATATTTGGTTTATGATTACATGGAAAACAACAGCCTTTCACATACTCTCTTAGGAGGAAAGGAGAATAGGGCAAAGTTTAATTGGGAAGCTAGACGGGATATTTCAATAGGAGTAGCTCGTGGAATTGCTTATCTTCATGAAGAAGTTGAGCCTCACATTGTGCATAGGGATATAAAAGGTAGCAATATACTTCTTGATCAAAATCTTAGACCTAAGGTTGCGGATTTCGGGTTGTCTAAGCTTTTACAAGAAGACAGCTCCTATGTTAGCACCCGTGTGGCTGGTACATTAGGATATCTTGCTCCAGAATATGCCGTAAGTGGACGTCTTACGAGAAAATCAGATGTTTACGGCTTCGGAGTATTACTTTTAGAGATTGTTAGTGGCCGAGCCGTCATTGACTTTGATATGGAACATGGAGAACACTACATTGTTGAAAAGGCATGGGACGCATTCAAGGATAACGACATTGCCCGGTTAGTGGACCCCGTGCTCGGAAAGGACTTCCCTAACTATGAAGCAGTTCAGTTTTTGAAAATAGGATTGCTTTGTGTTCAAGAAAACACAAAGCAAAGACCGCGAATGTCAACGGTACTTAAGATGTTGACTAATAAGAGCAAGGTCAATGATGATCGGATTTCAAAACCCGGGCTTGTTACTGATTTCATGGACATAAAATTCGGACAGAAGCATTCGACGCAGAGTGTTTTGTTCTCCAAGGCATCTACTAGTGACAGTATGCAGAGCCTTAATGATACTAAATCTTTTTAA 1125 40.8 MKYHFPFFSCCSSSSSTTAVINSPHGQNHDSFRVFSYNELKHATHNFHSSNKVGEGGFGSVYKGRLKDGSIVAVKVLSIEIETMRGEKEFVAELAALSNIKHENLVSLKGCCVDGTNRYLVYDYMENNSLSHTLLGGKENRAKFNWEARRDISIGVARGIAYLHEEVEPHIVHRDIKGSNILLDQNLRPKVADFGLSKLLQEDSSYVSTRVAGTLGYLAPEYAVSGRLTRKSDVYGFGVLLLEIVSGRAVIDFDMEHGEHYIVEKAWDAFKDNDIARLVDPVLGKDFPNYEAVQFLKIGLLCVQENTKQRPRMSTVLKMLTNKSKVNDDRISKPGLVTDFMDIKFGQKHSTQSVLFSKASTSDSMQSLNDTKSF 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9584144 9585771 - Conep13aG0130100.1 Cone13ag1268 451655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1268 374 FunFam Serine/threonine-protein kinase receptor 18 124 - -
Cone13ag1268 374 CDD STKc_IRAK 53 322 - -
Cone13ag1268 374 Gene3D Phosphorylase Kinase; domain 1 19 124 - -
Cone13ag1268 374 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524(InterPro)
Cone13ag1268 374 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 28 361 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cone13ag1268 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1268 374 FunFam Putative LRR receptor-like serine/threonine-protein kinase 125 332 - -
Cone13ag1268 374 Gene3D Transferase(Phosphotransferase) domain 1 125 334 - -
Cone13ag1268 374 ProSiteProfiles Protein kinase domain profile. 47 326 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1268 374 SUPERFAMILY Protein kinase-like (PK-like) 28 320 IPR011009 -
Cone13ag1268 374 Pfam Protein kinase domain 47 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1268 374 SMART serkin_6 47 320 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1268 Cone-Chr13:9584144 Cone6ag0186 Cone-Chr6:887390 5.20E-126 dispersed
Cone1ag1347 Cone-Chr1:56531822 Cone13ag1268 Cone-Chr13:9584144 2.66E-65 wgd
Cone1ag0478 Cone-Chr1:4613991 Cone13ag1268 Cone-Chr13:9584144 2.03E-20 wgd
Cone13ag1268 Cone-Chr13:9584144 Cone19ag1256 Cone-Chr19:8610969 1.63E-236 wgd
Cone13ag1268 Cone-Chr13:9584144 Cone5ag0334 Cone-Chr5:1416258 1.33E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82048 PF01145 Band_7 1.30E-19 CL0433 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1268 - - - 0.0