Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1269 ATGGGGAACATCGGGAGCACCGGAGCAAACAATCGTCGGAGACACGGAAGCCGCCGGCACCACCCGACGCCACCGCCTCCGGCGAATCCTCAGCCGGAAATAACCGCGAACCGGTACGTTTTTGCTGCAGCAACACCTTACCCTAACCAGCCGCCTCCATATTACCAGTACCCAGGCTATTACCCACCGCCACCGCCACCGCCACCTCCACATTCGATGCCTTTGCCGGTACCGTTTGATCAGCACCACCGTGGTGGCCCACACCCTCACATGGACCCCGCAAACTGGGTTGGAGGGAGGTATCCTTATGGGCCGGTTATGCAGCCTCAAACACCTTACGTCGAGCATCAGAAGGCGGTTACTATAAGAAATGATGTTAATCTTAAGAAGGAGACTCTGAGGGTCGAGCCTGATGTGCAGAATCCTGGCCGGTTTCTTGTGACTTTCACTTTTGATGCCACCGTTGCAGGAAGCGTCACGGTTTATTTCTTAGCAAAAGAAGGTGACGATTGTAACCTGACACCTACGAAAGAAAACATTTTCAAACCCTTTACAGTACATTTCGAGAAAGGTCTAGGGCAGAAGTTCAGACAGTCATCTGGAACTGGGATTGAGTTCTCAGCATTTGAGGAGTCCGAGCTAGTAAAAGTCAACGACGAGTTCATCTACCCATTAGTAATAAAGGCAGATTCTTCTTTCGCTCTGGACAACCAAACGGGACAGGATGGAAAACCAGAGCATGGAAGCACAAATTCCCAGATAACTCAGGCAGTGTTTGAGAAAGAGAAAGGCGAGTTTCAAGTGAGAGTTGTAAAGCAGATCTTGTGGGTAAATGGAATGAGGTATGAGCTGCAAGAGATATATGGGATTGGGAATTCAGTTGAGGGTGAAATGGATGGAAATGATAATGGAAAAGAATGCGTCATTTGCTTGTCGGAACCGAGGGACACTACTGCCCTTCCTTGCCGCCACATGTGCATGTGCAATGGATGTGCAAAGGTTTTGAGGTTTCAGACAAATAGGTGTCCCATATGCAGACAACCAATTGACAGGCTTCTAGAGATTAAGGTCAGCAATGTGCCCGAGGAATGA 1092 49.36 MGNIGSTGANNRRRHGSRRHHPTPPPPANPQPEITANRYVFAAATPYPNQPPPYYQYPGYYPPPPPPPPPHSMPLPVPFDQHHRGGPHPHMDPANWVGGRYPYGPVMQPQTPYVEHQKAVTIRNDVNLKKETLRVEPDVQNPGRFLVTFTFDATVAGSVTVYFLAKEGDDCNLTPTKENIFKPFTVHFEKGLGQKFRQSSGTGIEFSAFEESELVKVNDEFIYPLVIKADSSFALDNQTGQDGKPEHGSTNSQITQAVFEKEKGEFQVRVVKQILWVNGMRYELQEIYGIGNSVEGEMDGNDNGKECVICLSEPRDTTALPCRHMCMCNGCAKVLRFQTNRCPICRQPIDRLLEIKVSNVPEE 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9587451 9589873 + Conep13aG0130200.1 Cone13ag1269 451656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1269 363 SMART ring_2 307 345 IPR001841 -
Cone13ag1269 363 MobiDBLite consensus disorder prediction 1 47 - -
Cone13ag1269 363 CDD mRING-HC-C3HC5_MGRN1-like 305 346 IPR045195 -
Cone13ag1269 363 ProSiteProfiles Zinc finger RING-type profile. 307 346 IPR001841 -
Cone13ag1269 363 SUPERFAMILY RING/U-box 306 352 - -
Cone13ag1269 363 Pfam Zinc finger, C3HC4 type (RING finger) 305 351 - -
Cone13ag1269 363 FunFam probable E3 ubiquitin-protein ligase LOG2 291 356 - -
Cone13ag1269 363 PANTHER MAHOGUNIN 1 359 IPR045194 GO:0016567(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)
Cone13ag1269 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 356 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1269 Cone-Chr13:9587451 Cone7ag0215 Cone-Chr7:920899 4.64E-89 dispersed
Cone10ag0253 Cone-Chr10:1216381 Cone13ag1269 Cone-Chr13:9587451 4.68E-127 wgd
Cone13ag1269 Cone-Chr13:9587451 Cone19ag1257 Cone-Chr19:8616095 6.31E-224 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1269 K27504 - csv:101216150 533.102