Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1273 ATGTCGGCTAATGGTTTTTACATGCCTAGCTCTTTGCTTGAAGGGTTTGCTCAAGAACAGAATCCAAACCCTAACCCTATAATTCCCAATCCTAATCCGGCAGCTAAGAAGAAGAGAAATCATCCCGGAACACCAGATCCAGATGCCGAGGTTATTGCCTTATCGCCGAAGACGCTTATGGCGACGAACCGATTCGTATGCGAGATATGCAACAAAGGGTTTCAAAGAGACCAAAATTTACAGCTTCATCAAAGAGGTCATAACCTACCATGGAAGTTGAAGAAAAGGGCAAACAAGGAGCTTGTTAAGAAGAAGGTGTACATTTGTCCTGAAAAAACATGCGTTCACCACGACCCTGCTCGAGCTCTAGGCGACCTCACCGGAGTGAAGAAACATTTTAGTAGGAAACATGGTGAGAAGAAGTGGAAGTGTGAGAAATGTTCCAAAAAATATGCAGTTCAATCCGACTGGAAAGCTCACTCCAAAACATGTGGAACTAGAGAGTACAAATGCGATTGTGGAACCCTCTTTTCCAGGAAGGATAGCTTCATAACACATAGGGCATTCTGCGATGCCTTACTAGCTACAAATCTGCATTTCAGAAACGACACATCACCACTAAATGCTCCTGATCATCAATCCCTGAACAACATTTCTCAATCCGACACGGGTCTAATTCTTTCAGATTTTAAGGATCCGATGAACATACTTGATTCACAAAAGCCCAGGTTATCACTGCCGCCTAATTGGTTGAATAATCAAGCAAATTTCAATCCCATGGATCATGAAGCAGCAATGCTTATGGCTAATCCTAATAATGATTCAGCTTTCCGGTCAAACGCTGATGACCATTTTGACCCATTTAACATGGCGTCAGCAAATGCAACATTTTCAATGGAATACTCAAAGCCAGTTCCATGCATGGCGTCATCAGCAACAGCCCTTCTGCAGAAAGCTGCTCAGATGGGTTCTACAAGAAGCAAAGCAGCATCCGGCATGATCGATATGAGCAACTTTAATGGAGTGATTATGAGCTCGCCTTCTTCTTCTTCTTCTTCTCCATCCAACCGGCCGACGATCTTCGATCATCTAACGTTGATGGGTGATCAGAGACGTCTTCAGCTGGCAGCTTATGGTTCAAAGTAG 1146 43.72 MSANGFYMPSSLLEGFAQEQNPNPNPIIPNPNPAAKKKRNHPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHQRGHNLPWKLKKRANKELVKKKVYICPEKTCVHHDPARALGDLTGVKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALLATNLHFRNDTSPLNAPDHQSLNNISQSDTGLILSDFKDPMNILDSQKPRLSLPPNWLNNQANFNPMDHEAAMLMANPNNDSAFRSNADDHFDPFNMASANATFSMEYSKPVPCMASSATALLQKAAQMGSTRSKAASGMIDMSNFNGVIMSSPSSSSSSPSNRPTIFDHLTLMGDQRRLQLAAYGSK 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9597910 9599995 - Conep13aG0130600.1 Cone13ag1273 451660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1273 381 SMART c2h2final6 65 87 IPR013087 -
Cone13ag1273 381 SMART c2h2final6 107 137 IPR013087 -
Cone13ag1273 381 SMART c2h2final6 142 162 IPR013087 -
Cone13ag1273 381 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Cone13ag1273 381 Pfam Zinc-finger of C2H2 type 65 87 IPR013087 -
Cone13ag1273 381 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 141 165 - -
Cone13ag1273 381 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 103 137 - -
Cone13ag1273 381 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Cone13ag1273 381 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 345 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone13ag1273 381 FunFam protein indeterminate-domain 12-like 44 113 - -
Cone13ag1273 381 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Cone13ag1273 381 MobiDBLite consensus disorder prediction 16 47 - -
Cone13ag1273 381 SUPERFAMILY beta-beta-alpha zinc fingers 64 162 IPR036236 -
Cone13ag1273 381 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 168 197 - -
Cone13ag1273 381 Gene3D Classic Zinc Finger 43 118 - -
Cone13ag1273 381 Gene3D Classic Zinc Finger 120 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1273 Cone-Chr13:9597910 Cone3ag0793 Cone-Chr3:4085646 1.42E-98 dispersed
Cone10ag0256 Cone-Chr10:1223433 Cone13ag1273 Cone-Chr13:9597910 4.16E-110 wgd
Cone11ag1288 Cone-Chr11:9550552 Cone13ag1273 Cone-Chr13:9597910 5.71E-87 wgd
Cone13ag1273 Cone-Chr13:9597910 Cone18ag0291 Cone-Chr18:1420318 1.90E-98 wgd
Cone13ag1273 Cone-Chr13:9597910 Cone19ag1261 Cone-Chr19:8626165 3.66E-234 wgd
Cone13ag1273 Cone-Chr13:9597910 Cone3ag0282 Cone-Chr3:1468105 6.48E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44676 PF03141 Methyltransf_29 3.10E-130 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1273 K25870 - rcu:8284542 368.237