Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone13ag1275 | ATGAGTGTGATCGATATTTTGACCAGAGTAGATGCGATCTGCCAGAAGTATGACAGATATGATGCTGAGAAGCAGAAGGATCTCAATGTTGCTGGGGATGACGCCTTTGCTCGCCTCTACGCCGTCGTAGAAGCTGACATTGAAGCTGCTCTTGAGAAAGCGGAAAGTGCTTCGAAGGAGAAAAATAGGGCATCTGCAGTAGCAATGAATGCTGAGATTCGTCGTACCAAGGCTCGATTGCTAGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTTAAGAGGGTAAAAGGACTGTCGACTGAAGATCTTGCCACTAGGAATGATTTGGTCCTTGCTCTGCCTGACAGAATTCAAGCCATACCAGATGGTACTGTGACTAAGCCCAAAAAGAATGGAGCTTGGACTACCTCCTCAACTTCTCGCACTGAAATCAAATTTGACTCAGATGGGCGATTTGATGATGAATACTTTCAAACGACTGAGGAATCAAGTAACTTCAGGCAAGAGTATGAAATGCGAAAAGTGAAGCAGGATCAAGGTTTGGACGTGATTGCGGAAGGGTTGGATACATTAAAGAACATGGCTTCTGATATGAATGAGGAGTTGGATAGGCAAGTTCCCCTGATGGATGAGATAGATACTAAGGTGGACAAGGCTGCTTCTGACCTTAAGAATACTAATGTTAGACTTAAAGACACAGTTAACCAGCTGAGGTCCAGCAGAAACTTCTGCATCGATATTATTTTGTTGTGTATAATCCTGGGAATTGCTGCCTATTTATACAATGTGCTGAAGAAATGA | 801 | 43.82 | MSVIDILTRVDAICQKYDRYDAEKQKDLNVAGDDAFARLYAVVEADIEAALEKAESASKEKNRASAVAMNAEIRRTKARLLEEVPKLQRLAVKRVKGLSTEDLATRNDLVLALPDRIQAIPDGTVTKPKKNGAWTTSSTSRTEIKFDSDGRFDDEYFQTTEESSNFRQEYEMRKVKQDQGLDVIAEGLDTLKNMASDMNEELDRQVPLMDEIDTKVDKAASDLKNTNVRLKDTVNQLRSSRNFCIDIILLCIILGIAAYLYNVLKK | 266 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 9603855 | 9606250 | - | Conep13aG0130800.1 | Cone13ag1275 | 451662 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone13ag1275 | 266 | ProSitePatterns | Syntaxin / epimorphin family signature. | 177 | 216 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cone13ag1275 | 266 | Pfam | SNARE domain | 208 | 257 | IPR000727 | - | |
Cone13ag1275 | 266 | PANTHER | SYNTAXIN | 46 | 251 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cone13ag1275 | 266 | Gene3D | - | 171 | 232 | - | - | |
Cone13ag1275 | 266 | CDD | SNARE_Qc | 176 | 231 | - | - | |
Cone13ag1275 | 266 | Coils | Coil | 220 | 240 | - | - | |
Cone13ag1275 | 266 | FunFam | Putative syntaxin-71-like | 171 | 232 | - | - | |
Cone13ag1275 | 266 | SUPERFAMILY | SNARE fusion complex | 165 | 231 | - | - | |
Cone13ag1275 | 266 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 171 | 233 | IPR000727 | - | |
Cone13ag1275 | 266 | Coils | Coil | 40 | 67 | - | - | |
Cone13ag1275 | 266 | SMART | tSNARE_6 | 166 | 233 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag1275 | Cone-Chr13:9603855 | Cone19ag1262 | Cone-Chr19:8634624 | 6.47E-172 | wgd | |
Cone13ag1275 | Cone-Chr13:9603855 | Cone5ag1222 | Cone-Chr5:5619930 | 1.30E-72 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone13ag1275 | K08506 | - | csv:101215905 | 443.351 |