Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1275 ATGAGTGTGATCGATATTTTGACCAGAGTAGATGCGATCTGCCAGAAGTATGACAGATATGATGCTGAGAAGCAGAAGGATCTCAATGTTGCTGGGGATGACGCCTTTGCTCGCCTCTACGCCGTCGTAGAAGCTGACATTGAAGCTGCTCTTGAGAAAGCGGAAAGTGCTTCGAAGGAGAAAAATAGGGCATCTGCAGTAGCAATGAATGCTGAGATTCGTCGTACCAAGGCTCGATTGCTAGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTTAAGAGGGTAAAAGGACTGTCGACTGAAGATCTTGCCACTAGGAATGATTTGGTCCTTGCTCTGCCTGACAGAATTCAAGCCATACCAGATGGTACTGTGACTAAGCCCAAAAAGAATGGAGCTTGGACTACCTCCTCAACTTCTCGCACTGAAATCAAATTTGACTCAGATGGGCGATTTGATGATGAATACTTTCAAACGACTGAGGAATCAAGTAACTTCAGGCAAGAGTATGAAATGCGAAAAGTGAAGCAGGATCAAGGTTTGGACGTGATTGCGGAAGGGTTGGATACATTAAAGAACATGGCTTCTGATATGAATGAGGAGTTGGATAGGCAAGTTCCCCTGATGGATGAGATAGATACTAAGGTGGACAAGGCTGCTTCTGACCTTAAGAATACTAATGTTAGACTTAAAGACACAGTTAACCAGCTGAGGTCCAGCAGAAACTTCTGCATCGATATTATTTTGTTGTGTATAATCCTGGGAATTGCTGCCTATTTATACAATGTGCTGAAGAAATGA 801 43.82 MSVIDILTRVDAICQKYDRYDAEKQKDLNVAGDDAFARLYAVVEADIEAALEKAESASKEKNRASAVAMNAEIRRTKARLLEEVPKLQRLAVKRVKGLSTEDLATRNDLVLALPDRIQAIPDGTVTKPKKNGAWTTSSTSRTEIKFDSDGRFDDEYFQTTEESSNFRQEYEMRKVKQDQGLDVIAEGLDTLKNMASDMNEELDRQVPLMDEIDTKVDKAASDLKNTNVRLKDTVNQLRSSRNFCIDIILLCIILGIAAYLYNVLKK 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9603855 9606250 - Conep13aG0130800.1 Cone13ag1275 451662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1275 266 ProSitePatterns Syntaxin / epimorphin family signature. 177 216 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cone13ag1275 266 Pfam SNARE domain 208 257 IPR000727 -
Cone13ag1275 266 PANTHER SYNTAXIN 46 251 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cone13ag1275 266 Gene3D - 171 232 - -
Cone13ag1275 266 CDD SNARE_Qc 176 231 - -
Cone13ag1275 266 Coils Coil 220 240 - -
Cone13ag1275 266 FunFam Putative syntaxin-71-like 171 232 - -
Cone13ag1275 266 SUPERFAMILY SNARE fusion complex 165 231 - -
Cone13ag1275 266 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 171 233 IPR000727 -
Cone13ag1275 266 Coils Coil 40 67 - -
Cone13ag1275 266 SMART tSNARE_6 166 233 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1275 Cone-Chr13:9603855 Cone19ag1262 Cone-Chr19:8634624 6.47E-172 wgd
Cone13ag1275 Cone-Chr13:9603855 Cone5ag1222 Cone-Chr5:5619930 1.30E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1275 K08506 - csv:101215905 443.351