Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1278 ATGTTGAAACTTTCTCGTAATTTTTCCGGCATTGTCTTCTTCTTCATCGCCTCTGTATTACTGCCCTACGTTTTTTACACTGATATTACAGCGGCGACGACTGAATTCGACTTTGGAACTTTGACTCTAAGCAGCTTGATGCTCCTCGGAGACGCCCACTTAAACAATGGAAGCGTGAGGCTCACTCGCGACCTCGCCGTCCCCAACTCCGGCGCTGGAAGAGTCCTCTACACCAAACCTATAAGATTTCGAAAACCAGAGTCTCAGTTTCCGGCGAGCTTCTCCACCTTCTTCTCATTCTCCGTCACGAATTTGAACCCATCATCGATCGGCGGCGGACTCGCCTTCGTACTCTCTCCGGACGATGAAACTATCGGCGGCGCTGGTGGGTTTCTCGGACTCCCCGAAGACAAAACAACCGGCTCAGGTTTTCTAGCAGTAGAGTTCGATACTCTAATGGACGTGGAGTTCAAGGACATTAACGGAAATCACGTCGGATTGGATCTGAACAGCATGATATCTACACAAGTTGGCGATTTAGAAACGATCGGAGTCGATCTGAAAAGCAGTGATACGGTGAACGCGTGGATCGAGTTTGACGGGTTGACTCAGTTGTTCAACATTTCCGTCTCGTACTCGAATCTGAAACCGAAAGATCCACTCTTATCCTTCCCTCTCGATCTAAATCAGTACGTGAGCGAGTTCATGTACGTGGGTTTTTCCGGGTCGACTCAGGGGAGTACAGAAATTCACAGTGTGGACTGGTGGAGTTTCAGGTCGTCTTTCGAGTCAAACACTCCACCTGGATCGTTAACTCCTCCTCCGCCGCCAACGGCTACTTTGATGAACCCAACGGCTAATTCCGTGAAATCTCCACCTCCTGAAGCATTACCTCCATCGGGGTCTAACTCAAATTCAAGCTCAAATTCTGTATCAGAGAAGAACGGCAGCGAGTCACCTTCGTCCTGTCATAACCAGCTTTGCAAACAGGGCCCCGGTGCCGTAGCCGGAGTAGTAACAGCGGGGGCTTTTGCGTTAGCTCTATTCGCCGGAGCTCTGATCTGGGTATATTCCAAAAAACTCAAACGTGTTAAGAAATCCGATTCACTTGCATCAGATGTTATCAAACAGCCTAAAGAGTTCACCTACAAAGAGCTCAAAACCGCCACTAGATGCTTCAATACAAATAGAATCATAGGCAATGGTGCATTTGGGACTGTTTACAAAGGCATTTTAGAAGAAACAGGGGACATTGTTGCTGTAAAGAGATGTAGTCATAGCACTCAAGGAAAGACCGAATTCTTATCCGAATTATCGATAATCGGAACTCTAAGGCATAGGAATCTTGTCCGGCTTCAAGGTTGGTGTCACGAAAAAAGCGAAATCTTATTAGTCTATGATTTGATGCCTAATGGAAGTCTAGACAAAGCATTGTTTGAGGCTAGAATTCCATTACCATGGCCTAATAGGAAAAAAATCTTACTCGGTGTTGCTTCTGCTCTTGCTTATCTACATCAGGAATGTGAAAACCAAGTGATTCATAGAGATATCAAGACTAGTAACATTATGTTAGATGAAGGGTTCAATGCGAGATTGAGCGATTTTGGATTGGCCAGACAGATTGAACACGACAAATCGCCTGACGCCACGGTGGCAGCTGGAACAATGGGGTACTTAGCCCCCGAGTATCTTTTAACTGGCCGGGCCTCGGACAAAACAGACGTGTTTAGTTATGGAGCTGTGGTACTAGAAGTTGCAAGTGGGAGAAGGCCCATTGAGAAAGGTGATAATTATAATAACAACAATGAGATGGGGAAAAATGTGGGGACTAATAATAGCAATTTGGTGGATTGGGTATGGAGTCTGCATAGAGAAGGGAGGCTGTTAGTGGCGGCCGATTCGAGACTAGGGGGCGAGTTTGAGGAAGAAGAGATGGTAAGGGTGTTGCTAATTGGGCTGGCTTGTTCGAACCCGGACCCGTTGGCCCGACCCACAATGAGGAATGTTGTTCAAATGCTTGTGGGTGAAGCTCAAGCGCCAATTGTGCCAAGGACTAAACCTTCCACTAGTTTTTTTAGTACCGCTCATCTTTTGCTTAGTTTGCAAGATAGTGTTTCTGACTTGAATGGTATGATCACCATCTCCACCTCCTCGTCGGAACGGAGCTTCAACGGGGCATGTACCGACCGAGACAATAATACAATAGTTAGGCAATGTGAGGAGGAGGGGAGTAAGAACTAG 2241 46.68 MLKLSRNFSGIVFFFIASVLLPYVFYTDITAATTEFDFGTLTLSSLMLLGDAHLNNGSVRLTRDLAVPNSGAGRVLYTKPIRFRKPESQFPASFSTFFSFSVTNLNPSSIGGGLAFVLSPDDETIGGAGGFLGLPEDKTTGSGFLAVEFDTLMDVEFKDINGNHVGLDLNSMISTQVGDLETIGVDLKSSDTVNAWIEFDGLTQLFNISVSYSNLKPKDPLLSFPLDLNQYVSEFMYVGFSGSTQGSTEIHSVDWWSFRSSFESNTPPGSLTPPPPPTATLMNPTANSVKSPPPEALPPSGSNSNSSSNSVSEKNGSESPSSCHNQLCKQGPGAVAGVVTAGAFALALFAGALIWVYSKKLKRVKKSDSLASDVIKQPKEFTYKELKTATRCFNTNRIIGNGAFGTVYKGILEETGDIVAVKRCSHSTQGKTEFLSELSIIGTLRHRNLVRLQGWCHEKSEILLVYDLMPNGSLDKALFEARIPLPWPNRKKILLGVASALAYLHQECENQVIHRDIKTSNIMLDEGFNARLSDFGLARQIEHDKSPDATVAAGTMGYLAPEYLLTGRASDKTDVFSYGAVVLEVASGRRPIEKGDNYNNNNEMGKNVGTNNSNLVDWVWSLHREGRLLVAADSRLGGEFEEEEMVRVLLIGLACSNPDPLARPTMRNVVQMLVGEAQAPIVPRTKPSTSFFSTAHLLLSLQDSVSDLNGMITISTSSSERSFNGACTDRDNNTIVRQCEEEGSKN 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9613352 9615686 + Conep13aG0131100.1 Cone13ag1278 451665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1278 746 CDD lectin_legume_LecRK_Arcelin_ConA 50 262 IPR001220 GO:0030246(InterPro)
Cone13ag1278 746 CDD STKc_IRAK 399 673 - -
Cone13ag1278 746 Pfam Legume lectin domain 34 265 IPR001220 GO:0030246(InterPro)
Cone13ag1278 746 ProSitePatterns Serine/Threonine protein kinases active-site signature. 512 524 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1278 746 PANTHER - 36 691 IPR050528 GO:0002229(PANTHER)|GO:0005886(PANTHER)
Cone13ag1278 746 Gene3D - 32 269 - -
Cone13ag1278 746 ProSitePatterns Protein kinases ATP-binding region signature. 399 422 IPR017441 GO:0005524(InterPro)
Cone13ag1278 746 Pfam Protein kinase domain 394 671 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1278 746 FunFam L-type lectin-domain containing receptor kinase VIII.1 357 468 - -
Cone13ag1278 746 Gene3D Transferase(Phosphotransferase) domain 1 469 681 - -
Cone13ag1278 746 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 276 IPR013320 -
Cone13ag1278 746 ProSiteProfiles Protein kinase domain profile. 393 682 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1278 746 SMART serkin_6 393 682 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1278 746 MobiDBLite consensus disorder prediction 300 326 - -
Cone13ag1278 746 MobiDBLite consensus disorder prediction 264 326 - -
Cone13ag1278 746 FunFam L-type lectin-domain containing receptor kinase VIII.1 32 271 - -
Cone13ag1278 746 SUPERFAMILY Protein kinase-like (PK-like) 374 700 IPR011009 -
Cone13ag1278 746 Gene3D Phosphorylase Kinase; domain 1 355 468 - -
Cone13ag1278 746 FunFam L-type lectin-domain containing receptor kinase VIII.1 469 691 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1278 Cone-Chr13:9613352 Cone14ag1225 Cone-Chr14:9937651 2.59E-189 dispersed
Cone12ag1007 Cone-Chr12:8523710 Cone13ag1278 Cone-Chr13:9613352 7.38E-11 transposed
Cone13ag1278 Cone-Chr13:9613352 Cone19ag1265 Cone-Chr19:8645615 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82049 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1278 - - - 0.0