Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone13ag1293 | ATGGCCGAAGCTCCGGTAAGTCCAGGCGGAGGGAGCCACGAGAGCGGCGAGCATAGTCCCCGGTCAAATTTTCTTGAACAGGACAGGTACCTTCCGATTGCGATTATCAGTAGGATTATGAAGAAAGCTCTCCCTGCGAATGGAAAAATTGCCAAGGATGCTAAGGAGACTGTACAAGAATGTGTCTCTGAGTTCATAAGCTTCGTCACCAGCGAGGCGAGTGATAAATGCCAGAGAGAGAAGAGGAAGACGATTAATGGCGATGATTTGCTATGGGCAATGGCAACTCTAGGTTTCGAAGATTATATTGATCCGCTTAAAATTTACTTGGCTAGATATAGAGAGTTGGAGGATGATACCAAGGGGTTTGGAAAGGTTGGAGAGGCATCTACTTAG | 396 | 46.72 | MAEAPVSPGGGSHESGEHSPRSNFLEQDRYLPIAIISRIMKKALPANGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLARYRELEDDTKGFGKVGEAST | 131 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 9673921 | 9675817 | - | Conep13aG0132600.1 | Cone13ag1293 | 451680 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone13ag1293 | 131 | FunFam | Nuclear transcription factor Y subunit B-3 | 19 | 131 | - | - | |
Cone13ag1293 | 131 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 17 | 120 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
Cone13ag1293 | 131 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 61 | 77 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone13ag1293 | 131 | Gene3D | Histone, subunit A | 17 | 130 | IPR009072 | GO:0046982(InterPro) | |
Cone13ag1293 | 131 | PRINTS | CCAAT-binding transcription factor subunit A signature | 58 | 76 | - | - | |
Cone13ag1293 | 131 | PRINTS | CCAAT-binding transcription factor subunit A signature | 77 | 95 | - | - | |
Cone13ag1293 | 131 | PRINTS | CCAAT-binding transcription factor subunit A signature | 96 | 114 | - | - | |
Cone13ag1293 | 131 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cone13ag1293 | 131 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 30 | 94 | IPR003958 | - | |
Cone13ag1293 | 131 | SUPERFAMILY | Histone-fold | 27 | 122 | IPR009072 | GO:0046982(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag1293 | Cone-Chr13:9673921 | Cone8ag1366 | Cone-Chr8:10907603 | 8.22E-57 | dispersed | |
Cone1ag1336 | Cone-Chr1:56471228 | Cone13ag1293 | Cone-Chr13:9673921 | 3.19E-63 | wgd | |
Cone10ag0264 | Cone-Chr10:1261543 | Cone13ag1293 | Cone-Chr13:9673921 | 4.83E-80 | wgd | |
Cone13ag1293 | Cone-Chr13:9673921 | Cone19ag1279 | Cone-Chr19:8705820 | 1.20E-85 | wgd | |
Cone13ag1293 | Cone-Chr13:9673921 | Cone3ag0290 | Cone-Chr3:1505735 | 1.80E-82 | wgd | |
Cone13ag1293 | Cone-Chr13:9673921 | Cone5ag0323 | Cone-Chr5:1363391 | 1.24E-71 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44679 | PF04398 | DUF538 | 5.80E-29 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone13ag1293 | K08065 | - | gmx:100798667 | 227.639 |