Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1293 ATGGCCGAAGCTCCGGTAAGTCCAGGCGGAGGGAGCCACGAGAGCGGCGAGCATAGTCCCCGGTCAAATTTTCTTGAACAGGACAGGTACCTTCCGATTGCGATTATCAGTAGGATTATGAAGAAAGCTCTCCCTGCGAATGGAAAAATTGCCAAGGATGCTAAGGAGACTGTACAAGAATGTGTCTCTGAGTTCATAAGCTTCGTCACCAGCGAGGCGAGTGATAAATGCCAGAGAGAGAAGAGGAAGACGATTAATGGCGATGATTTGCTATGGGCAATGGCAACTCTAGGTTTCGAAGATTATATTGATCCGCTTAAAATTTACTTGGCTAGATATAGAGAGTTGGAGGATGATACCAAGGGGTTTGGAAAGGTTGGAGAGGCATCTACTTAG 396 46.72 MAEAPVSPGGGSHESGEHSPRSNFLEQDRYLPIAIISRIMKKALPANGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLARYRELEDDTKGFGKVGEAST 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9673921 9675817 - Conep13aG0132600.1 Cone13ag1293 451680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1293 131 FunFam Nuclear transcription factor Y subunit B-3 19 131 - -
Cone13ag1293 131 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 120 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone13ag1293 131 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone13ag1293 131 Gene3D Histone, subunit A 17 130 IPR009072 GO:0046982(InterPro)
Cone13ag1293 131 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Cone13ag1293 131 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Cone13ag1293 131 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Cone13ag1293 131 MobiDBLite consensus disorder prediction 1 25 - -
Cone13ag1293 131 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Cone13ag1293 131 SUPERFAMILY Histone-fold 27 122 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1293 Cone-Chr13:9673921 Cone8ag1366 Cone-Chr8:10907603 8.22E-57 dispersed
Cone1ag1336 Cone-Chr1:56471228 Cone13ag1293 Cone-Chr13:9673921 3.19E-63 wgd
Cone10ag0264 Cone-Chr10:1261543 Cone13ag1293 Cone-Chr13:9673921 4.83E-80 wgd
Cone13ag1293 Cone-Chr13:9673921 Cone19ag1279 Cone-Chr19:8705820 1.20E-85 wgd
Cone13ag1293 Cone-Chr13:9673921 Cone3ag0290 Cone-Chr3:1505735 1.80E-82 wgd
Cone13ag1293 Cone-Chr13:9673921 Cone5ag0323 Cone-Chr5:1363391 1.24E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44679 PF04398 DUF538 5.80E-29 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1293 K08065 - gmx:100798667 227.639