Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1294 ATGGCCGCCGCCGCAGTTCGCCCTCTCGTCACTGTCCATAATCTCGAAGGCGACATGGCAACGGATTCTGCAGCAACCCTTCCACTCCCTGATGTGATGAAGGCATCGATCCGTCCTGATATCGTCAACTTTGTTCACTCTAACATCTCCAAGAACAAGCGCCAGCCCTACGCCGTCAGCAAGCGCGCTGGTCACCAAACCTCAGCCGAGTCTTGGGGTACCGGGCGTGCTGTGTCTCGTATTCCTCGCGTTCCTGGTGGCGGTACTCACCGCGCCGGTCAGGGTGCTTTTGGAAACATGTGCCGCGGTGGTCGTATGTTTGCTCCGACTAAGATCTGGCGGCGCTGGCACCGAAAGATCAACGTGAATCAGAAAAGGTATGCCGTCGTTTCAGCTATTGCTGCCTCTGCTATTCCTTCTTTGGTTTTGGCCCGTGGTCATAGAATTGAGACTGTTCCTGAACTGCCTCTGGTTATCGGAGACTCTGCTGAGGGTGTTGAAAAGACCTCTGCTGCGATTAAGGTCTTGAAGCAGATTGGAGCTTATGCTGATGCCGAGAAGGCTAAGGACAGCCATGCCATCCGCACAGGGAAGGGTAAAATGAGGAACCGTCGCTATATCTCTCGTAAGGGTCCATTGATTGTGTATGGAACAGAGGGGGCGAAGATCGTGAAAGCTTTCCGTAATATTCCCGGAGTTGAGGTGGCCAATGTGGAGAGGCTCAATCTACTAAAACTCGCACCAGGCGGTCATCTTGGCAGATTTGTGATCTGGACCAGGTCAGCTTTTGAGAAGCTTGACTCAATCTATGGTTCATTTGAGAAATCCTCTGAGAAGAAGAAGGGATATGTGCTACCCCGGTCCAAGATGGTTAATGCTGATTTGGCGAGGATTATCAACTCCGATGAGGTTCAATCTGTTGTAAGGCCGATCAAGAAGGAGGTCAAGAGGGCTCCAATGAAGAAGAACCCATTGAAGAACCTCAACACCATGCTTAGATTGAATCCATATGCCAAGACTGCCAAGAGGATGGCGCTTCTAGCTGAGGAACAGCGTGTTAAGGCCAAGAGGGAGAAGCTTGAAAAGAAGAGGAACCCTATCTCAAAGGAGGAGGCTGCTGCAGTCAAGGCTGCTGGAAAGGCATGGTATCAGACTATGATCTCGGACAGCGACTACACCGAATTCGAGAACTTCACCAAGTGGCTCGGCGTTTCCCAGATCAGGCTAAACTGGATTAGTGACTTCAAATATGATAAAGGGTTCGAGCCCATAAGGAGCGGGTTCCAGGGTTTGAGGGTCCATGGACAGCCAATCCTCTCAACTCCTACTTCAAGCTTTATAAGCTTGGATTGTGGAGGACAAGAAACTTCCACTGATAATATAGGTATAGAATGGAGTCCAGACAATCAACTACGTTATGGAGAAACAGCAAATATATCTGTTGCAAATGAGACAAGAAAGCAATACACAACAGTACGACACTTCCCTGCTGATTCTAGGAAGTATTGTTACACACTTAATGTCACGAGTAGGACTCGGTACCTTATCAGAGCGACATTCTTATATGGTAACTTTGACAAAAACAATGTCTATCCAAAATTCGACATTTCTCTTGGGGCGACTCCCTGGTCAACTATTGTCATCTCTGATGCTGATAAAATGGAGGTTATAGAGCTTATATTCCTTGCTTCAAGTCCTACTGTCAGTGTTTGTTTATCAAATGCAACAACTGGGCAACCATTTATTTCTACGCTTGAGCTCAGACAATTCAATGGCTCAATTTACTATACAGAATATGAAAATCAGTTTTACCTTAGTGTCTCTGCAAGAATAAATTTTGGTGCTGAATCTGAAGCTCCTGTAAGGTACCCAGATGACCCATTTGACCGAATATGGGAGTCAGACTCGGTGAGAAAAGCAAATTACCTTGTTGATGTAGCAGCTGGAACGGAAAAGGTATCAACGAAATTGCCAATTGATGTAAATAGTGTAACCAGACCACCTCAAAAAGTTATGCAGACAGCTGTTGTTGGAAGAAATGGTTCGTTAACTTACCGGTTGAATCTGGATGGTTTTCCTGGTTCTGGTTGGGCATTCACGTACTTTGCTGAAATCGAAGATTTTGATGCAACACAGTCCAGAAAATTCCGATTGGTACTACCTGGCCAGCCTGATGTTAGCAAAGCTGTTGTTAACATTGAAGAAAATGCTCAAGGCAAATATCGTCTCTATGAGCCGGGATACTACAACTTAACCCTCCCTTTTGTGTTATCTTTTAGATTTGGGAAAACATCAGATTCTACCTTGGGCCCTCTTCTAAATGCTATGGAGATTAGTAAATATCTTGAGAAAAGTGATGGTTCTCTAGATGGAGCAGCTATTGCAGGTGTAGTTTTACATTACTCATCAGAAGACTGGGCTCAAGAAGGTGGCGATCCATGTGCACCAGCCCCATGGTCGTGGTTGGAATGTAACTCAGATCCACAACCAAGTATAGTTAAAATTTCCTTGTCCAAAAAAAATTTGACAGGGAGTATCCCTTCAGACTTGATGGAACTAACCGGTTTGGTTGAGCTATGGCTTGATGGGAATTCATTAACTGGTTCTATACCTGATTTCACTCGATGTGTGAACTTGAAGATCCTTCATCTCGAGAACAATCAATTGACTGGAGAACTGCCATCATCTTTGGCGAATCTGCCTAATTTGAGGGAACTGTATGTGCAGAATAACATGTTATCTGGAACAGTCCCATCAAGTCTTCTCAATAAAAACTTGGTTCTTGACTACTCTCAAAACCTTAATCTTCATAAAGGAAAAGGAAAAGGGAGCCGTCTAGCTATCATCGTTGGTACATCAGTTGGTGCTGCTGTGTTGCTGATAGCTACTATTGTGTCTTGCCTCCTTTTGCGGAAAGTGAAGAAAGGACATCAAGATCAAGGTCTTCCTAGAGAATCCTTGGCTGTGCAAAGGCATGTTTCTACAAAAGGTGAAGGCACTGAATCAGCACATTGTTTCTCATTCGATGAAATCGAAGATGCTACAAGAAAATTCGAGAAGAAAATTGGTTCTGGAGGTTTTGGTGTTGTATACTATGGAAAATTGGATGATGGAAAAGAGATTGCGGTCAAAGTTCTGACCAGCAATTCCTACCAGGGAAAGCGAGAGTTTTCAAATGAGGTGACCCTTTTGTCTAGGATTCATCACAGAAATTTGGTTCAATTTATTGGATATTGTCAAGAAGAAGGGAGAAGCATGCTCATTTATGAGTTCATGCATAATGGAACTCTCAAGGAGCACCTTTATGGACCTTTAACACGTGAAAGAATTATAAACTGGATCAAGCGCCTTGAAATTGCCGAAGATTCCGCAAGAGGAATTGAGTACCTTCACACGGGCTGTGTTCCGGCCATTATTCATAGGGATCTGAAAAGCAGTAATATTCTTCTCGACAAACATATGAAAGCAAAAGTCTCCGATTTCGGTCTATCCAAGCTTGCAGTGGATGGTGCCTCACATGTGTCTAGCATTGTTCGAGGAACTGTTGGATATTTGGATCCTGAGTATTATATATCACAACAGTTGACAGACAAGAGTGATGTCTATAGTTTTGGTGTCATTCTTCTCGAGTTGATATCCGGTCAAGAAGCTATATCTAACGAGAACTTTGGAGTTAATTGTCGCAACATAGTCCAATGGGCGAAATTGCATATTGAAAGTGGTGACATTCAAGGGATTATAGATCCATCACTACAGAATGAATATGATATTCAATCAATGTGGAAGATAGCCGAGAAGGCCTTGTTGTGTGTCCAGCCCCATGGACATATGAGGCCGTCCATATCAGAAGTGCTAAAGGAGATCCAGGATGCAATTTCTATCGAAAAAGAAGCTCAAGCAGCTAGAGAAGGCAACTCGCATGATATGTCCAAAAATTCAATCCATTCTTCACTGAATATGGGATCACTTGATCTAGGTGGAACAGAGAATTACATCTCCTTTGATGACTCCATTGCTCGGCCCACCCCACGGTAG 4035 44.21 MAAAAVRPLVTVHNLEGDMATDSAATLPLPDVMKASIRPDIVNFVHSNISKNKRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVLARGHRIETVPELPLVIGDSAEGVEKTSAAIKVLKQIGAYADAEKAKDSHAIRTGKGKMRNRRYISRKGPLIVYGTEGAKIVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFVIWTRSAFEKLDSIYGSFEKSSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKKEVKRAPMKKNPLKNLNTMLRLNPYAKTAKRMALLAEEQRVKAKREKLEKKRNPISKEEAAAVKAAGKAWYQTMISDSDYTEFENFTKWLGVSQIRLNWISDFKYDKGFEPIRSGFQGLRVHGQPILSTPTSSFISLDCGGQETSTDNIGIEWSPDNQLRYGETANISVANETRKQYTTVRHFPADSRKYCYTLNVTSRTRYLIRATFLYGNFDKNNVYPKFDISLGATPWSTIVISDADKMEVIELIFLASSPTVSVCLSNATTGQPFISTLELRQFNGSIYYTEYENQFYLSVSARINFGAESEAPVRYPDDPFDRIWESDSVRKANYLVDVAAGTEKVSTKLPIDVNSVTRPPQKVMQTAVVGRNGSLTYRLNLDGFPGSGWAFTYFAEIEDFDATQSRKFRLVLPGQPDVSKAVVNIEENAQGKYRLYEPGYYNLTLPFVLSFRFGKTSDSTLGPLLNAMEISKYLEKSDGSLDGAAIAGVVLHYSSEDWAQEGGDPCAPAPWSWLECNSDPQPSIVKISLSKKNLTGSIPSDLMELTGLVELWLDGNSLTGSIPDFTRCVNLKILHLENNQLTGELPSSLANLPNLRELYVQNNMLSGTVPSSLLNKNLVLDYSQNLNLHKGKGKGSRLAIIVGTSVGAAVLLIATIVSCLLLRKVKKGHQDQGLPRESLAVQRHVSTKGEGTESAHCFSFDEIEDATRKFEKKIGSGGFGVVYYGKLDDGKEIAVKVLTSNSYQGKREFSNEVTLLSRIHHRNLVQFIGYCQEEGRSMLIYEFMHNGTLKEHLYGPLTRERIINWIKRLEIAEDSARGIEYLHTGCVPAIIHRDLKSSNILLDKHMKAKVSDFGLSKLAVDGASHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNENFGVNCRNIVQWAKLHIESGDIQGIIDPSLQNEYDIQSMWKIAEKALLCVQPHGHMRPSISEVLKEIQDAISIEKEAQAAREGNSHDMSKNSIHSSLNMGSLDLGGTENYISFDDSIARPTPR 1344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9676434 9686368 - Conep13aG0132700.1 Cone13ag1294 451681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1294 1344 SMART serkin_6 1016 1292 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1294 1344 Pfam Malectin-like domain 449 780 IPR024788 -
Cone13ag1294 1344 Gene3D - 444 589 - -
Cone13ag1294 1344 FunFam Leucine-rich repeat receptor-like protein kinase 992 1091 - -
Cone13ag1294 1344 PANTHER OS07G0107800 PROTEIN-RELATED 873 1296 - -
Cone13ag1294 1344 SUPERFAMILY L domain-like 817 924 - -
Cone13ag1294 1344 ProSiteProfiles Protein kinase domain profile. 1016 1292 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1294 1344 Pfam Ribosomal protein L4/L1 family 29 268 IPR002136 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cone13ag1294 1344 SUPERFAMILY Protein kinase-like (PK-like) 1000 1286 IPR011009 -
Cone13ag1294 1344 SUPERFAMILY Ribosomal protein L4 9 268 IPR023574 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cone13ag1294 1344 Coils Coil 338 363 - -
Cone13ag1294 1344 FunFam 60S ribosomal protein L4 4 309 - -
Cone13ag1294 1344 Gene3D Phosphorylase Kinase; domain 1 989 1091 - -
Cone13ag1294 1344 Pfam Protein kinase domain 1018 1286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1294 1344 Gene3D - 4 309 IPR023574 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cone13ag1294 1344 ProSitePatterns Protein kinases ATP-binding region signature. 1022 1044 IPR017441 GO:0005524(InterPro)
Cone13ag1294 1344 MobiDBLite consensus disorder prediction 55 95 - -
Cone13ag1294 1344 FunFam Leucine-rich repeat protein kinase family protein 791 940 - -
Cone13ag1294 1344 Pfam 60S ribosomal protein L4 C-terminal domain 281 353 IPR025755 -
Cone13ag1294 1344 Gene3D Transferase(Phosphotransferase) domain 1 1092 1316 - -
Cone13ag1294 1344 ProSitePatterns Ribosomal protein L1e signature. 121 147 IPR013000 -
Cone13ag1294 1344 CDD STKc_IRAK 1022 1289 - -
Cone13ag1294 1344 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 1092 1301 - -
Cone13ag1294 1344 MobiDBLite consensus disorder prediction 55 74 - -
Cone13ag1294 1344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1138 1150 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1294 1344 Pfam Leucine Rich repeats (2 copies) 878 913 IPR025875 -
Cone13ag1294 1344 Gene3D Ribonuclease Inhibitor 797 941 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1106 Cone-Chr13:8909099 Cone13ag1294 Cone-Chr13:9676434 8.23E-38 dispersed
Cone13ag1294 Cone-Chr13:9676434 Cone19ag1283 Cone-Chr19:8716306 2.00E-261 dispersed
Cone3ag1180 Cone-Chr3:30464253 Cone13ag1294 Cone-Chr13:9676434 1.36E-67 dispersed
Cone9ag1279 Cone-Chr9:9578313 Cone13ag1294 Cone-Chr13:9676434 1.15E-65 dispersed
Cone19ag1281 Cone-Chr19:8712022 Cone13ag1294 Cone-Chr13:9676434 2.63E-112 transposed
Cone20ag0752 Cone-Chr20:5246327 Cone13ag1294 Cone-Chr13:9676434 2.47E-115 transposed
Cone1ag0678 Cone-Chr1:6360381 Cone13ag1294 Cone-Chr13:9676434 1.43E-70 wgd
Cone13ag1294 Cone-Chr13:9676434 Cone19ag1280 Cone-Chr19:8708467 0 wgd
Cone13ag1294 Cone-Chr13:9676434 Cone3ag0292 Cone-Chr3:1514184 1.69E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82050 PF01287 eIF-5a 2.90E-29 CL0021 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1294 - - - 0.0