Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1312 ATGAGGAGCCTCTGCTTCCACGCCAGGACATCGTCCTATTTCATCTCCGGCGATTCGGATTCATCACCGAAGATGAGAACTTCAGATTCTGCAACGTCTCCTCGTGATCATTTCTCAGATTCGATGATACTACTAGAGAAGAGCATTGAAGCGGCTGAATCGATGATTTTGAAAAGGAATCCAGAATCTTCTGCCTTCGCTGAAGTTACTATGTTGTATCAGAACCGAACGGAGGCTCTGAACTTCATCGAGCGTGTCGAGAAGCTTCAGAAGGCGATGTTCCGATTGGTTTCCGAGGATAAACCTTCCGCGATGCTCATTCACGCACAGAGTCTGATGCAGATTGCAATGAAGAGGCTCCAGAAAGAGTTTTATCAGATTCTTTACATGAATCGAGCTCATCTAGATCCAAAATCAGTCTCTGCTCGGTCCCCTCGCAGCTCCGCCAGATGCTCTTCTGATTACGAGGATGACGCAACTGGAGATGACGATGTATTTGAAGGCGAAGAAGATTCTTACATAGCTATGGCGGACTTGAGGTCAATAGCAGAGTGTATGATCTCCTGTGGTTACGGAAAAGAGTGTATAAGCATATACAAGATTATTCGGAAATCCATAGTCGACGAGGGAATTTACCGTCTCGGAGTTGAGAAACAGAGTTCTTCGCAGATCAATAAAATGGACTGGGATCTGCTTGAGGTGAGAATTAAGAACTGGTTGGATGCAGTGAAAATCGCCATGAGAACTCTCTTTACCGGCGAGCGAATCCTCTGTGACCACGTCTTCGCCGCTTCTGATTCCATCAGAGAAACTTGTTTCACTGAGATTTCCAAAGAAGGCGCTTTGCTTCTCTTTCACTTCCCCGAGCTCGTTGCTGCAAAGGCCAGTAAATCGCCGGAAATGATTTTCCGCTTGCTTGATATGTACACGACCATAGCCGAAAACTCGATGGAGATCGAAGCGATTTTTTCATTCAATTCCGTTTCTTCCGTTCCATTTCAAGCTTATAACTCTCTTTCCCGACTTGGTGATTCAATTCGCACAATGGTAGCGGATTTCGAGTCTTTGATTCACAAGGATTCGTCGAAATCACCAGTAGCCGGCGGTGGTATCCACAATTTGACTCTTCAGACTATGAGATACCTCTCTCTACTTGCCGACTACAGTAACGTCTTGACCGACATTTTCGCTGACTGGACGTTGCCGAATAAGTCCTCGATGCCGGAATCTTACTTCGAATGCATCTCTTCCGATGATTCTCCTGCACCGGCGTTCTCCTTACGAGTGGCGTGGTTGATCCTCGTTTTCCTCTGCAAACTCGACGGAAAAGGAAAACAGTATAAAGACGTCTCTCTTTCGTATCTTTTCTTATCAAACAATCTCCGACACGTCGCTTTTAAGGTCCGCACGTCCAACCTTCAGTATATACTTGGTGAAGAATGGATCATCAAGCAGGAGGCCAAAGCGAAGCAATTCGCAGCTAACTACGAGCGGTTAGCGTGGGGCCCCGTCATGTCATCTTTACCGGAAAATCCAACTGCCGAGATTCATCCGACAGAAGCTACGGAGGTTTTCCTTAATTTCAATACCACTTTCGATCAAGCGTTTAGGAAGCAGAAGCTGTGTGTCGTAGCGGACTCGAAATTCCGAGACGAAATACAGACGTCCATTGCGATGAAGTTGGTACCCGCTTATAGAGAATTCTACAATGTGCATAGAAACATGGGGCAATGTATCCGAATTTCCCCGGAAGACGTATGTGATTACTTGTCGTACCTGTTCATTGCAGGATCGGAGAGAATGTCGACGTCTTCTTCGTCATCTGGTTCTCCTTAG 1836 46.24 MRSLCFHARTSSYFISGDSDSSPKMRTSDSATSPRDHFSDSMILLEKSIEAAESMILKRNPESSAFAEVTMLYQNRTEALNFIERVEKLQKAMFRLVSEDKPSAMLIHAQSLMQIAMKRLQKEFYQILYMNRAHLDPKSVSARSPRSSARCSSDYEDDATGDDDVFEGEEDSYIAMADLRSIAECMISCGYGKECISIYKIIRKSIVDEGIYRLGVEKQSSSQINKMDWDLLEVRIKNWLDAVKIAMRTLFTGERILCDHVFAASDSIRETCFTEISKEGALLLFHFPELVAAKASKSPEMIFRLLDMYTTIAENSMEIEAIFSFNSVSSVPFQAYNSLSRLGDSIRTMVADFESLIHKDSSKSPVAGGGIHNLTLQTMRYLSLLADYSNVLTDIFADWTLPNKSSMPESYFECISSDDSPAPAFSLRVAWLILVFLCKLDGKGKQYKDVSLSYLFLSNNLRHVAFKVRTSNLQYILGEEWIIKQEAKAKQFAANYERLAWGPVMSSLPENPTAEIHPTEATEVFLNFNTTFDQAFRKQKLCVVADSKFRDEIQTSIAMKLVPAYREFYNVHRNMGQCIRISPEDVCDYLSYLFIAGSERMSTSSSSSGSP 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9740457 9742691 - Conep13aG0134500.1 Cone13ag1312 451699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1312 611 SUPERFAMILY Cullin repeat-like 56 594 IPR016159 -
Cone13ag1312 611 MobiDBLite consensus disorder prediction 17 36 - -
Cone13ag1312 611 Pfam Exo70 exocyst complex subunit C-terminal 237 591 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cone13ag1312 611 Pfam Exocyst complex component Exo70 N-terminal 49 128 - -
Cone13ag1312 611 Gene3D Exocyst complex component Exo70 62 602 - -
Cone13ag1312 611 MobiDBLite consensus disorder prediction 138 162 - -
Cone13ag1312 611 PANTHER EXOCYST COMPLEX PROTEIN EXO70 33 594 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1312 Cone-Chr13:9740457 Cone5ag1180 Cone-Chr5:5298449 1.94E-187 dispersed
Cone1ag0674 Cone-Chr1:6316183 Cone13ag1312 Cone-Chr13:9740457 2.40E-185 wgd
Cone10ag0284 Cone-Chr10:1348849 Cone13ag1312 Cone-Chr13:9740457 9.21E-231 wgd
Cone11ag1101 Cone-Chr11:8582489 Cone13ag1312 Cone-Chr13:9740457 1.01E-148 wgd
Cone11ag1266 Cone-Chr11:9409923 Cone13ag1312 Cone-Chr13:9740457 2.79E-179 wgd
Cone13ag1312 Cone-Chr13:9740457 Cone18ag0321 Cone-Chr18:1595951 3.28E-179 wgd
Cone13ag1312 Cone-Chr13:9740457 Cone18ag0474 Cone-Chr18:2306911 1.93E-147 wgd
Cone13ag1312 Cone-Chr13:9740457 Cone19ag1300 Cone-Chr19:8771675 0 wgd
Cone13ag1312 Cone-Chr13:9740457 Cone3ag0313 Cone-Chr3:1592344 1.89E-225 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1312 K07195 - rcu:8261785 671.003