Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1327 ATGGGAGAAGGAGATGTTTGTTTAGATGTATTGACAAATGTAGCGGAGGAGAAAGAGAGTGCTTCAAGATTTGAATTGAAGCGGGACCATCAGTGTCTGGTAGATAATACTGAACACGAGCCGTTTCTGAGCAAGAGGCAGGCAAAAGAAGTTTCCAATGATGACATACGGTCAGAAGTTTCAAACCCTGTTATTTCTCCTAAAGAGAACCAGATTAGTTTTCAAGATATTTCTAGCCAACCGGCTGAGTTAGAAAACAGTAACCAAGTAGAGTGTGGCGATATTACATCTTCGTGTTCAGGGAATCTGAGTTCCTTGAGTGATGGGGAGCATCGAGAGAATGATACGTGTCGAAATCAGAGCGAGCCATCTGAGGCTACCCAAGTCTCGAGGTTTGTTTTGGAAATTCCCAAGGAGGCTAGTTCGACTGGAATTAGAAAAATTACATTTAGGTTCAGCAAAAGAAAGGAAGACTGTAATTATCATTCACATGGGTCAGTATATCGGGCTGTAACAGGAAGTTATGGTGAGGAGCATGCGCCAATGGATGATGCATATTTGGACACACCAGCACAAATGTATAGAAAGGGTGCTTCTAATATGGAATTGAAAATGTCTAAGAAGGTTCTCCCTAACAATTATCCTACGAATGTCAAGAAACTGCTATCAACTGGCATCCTAGATGAAGCCCGAGTGAAGTATATTTCTACCACAGGCAAGATAGAGCTACCGGGAATTATTAAGGGCGGTGGATATATGTGTGGATGCTCATCATGCAATTTCTCGAATGTTCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTGTCAAAACCAGACATCCGAATAATCATATATTCTTGGACAATGGGAGGCCAATTTATAGTGTCATACAGGAGATCAGGACAGCTCCTCTTAGCATGTTGGATAAAGTGATCAAGGATGTGGCCGGTTCATCTGTCAATGCGGATTCTTTCGAGGCATGGAAAGAAAGTTTCCTTAAAAAAGAGGCAAGTGTTGAAGCAGAAAATAATAACATAGGGGTTTCCGGTTCGTCCCATTTTATAAGTTGCTCCAGTCAAGCTTTGGAAGCGAGCATTGGTTCTACTTCGTGTTTCATAGTACCAGACAACCCTGTAGAACACCATATGCATATGGAGATGGTAGAAGAGCAGAAATATGTCAAGAAGGAAATCTCCAACATGTACAAATCAGTCTTTCAACAAAAGAAAAGTACAGGAGGTGCAAAGAAAAGAGATAATGATTTGCACCGGTTGCTTTTCATGCCAAATGGACTTCCAGATGGAGCCGAACTTGCATACTTTGTCAAAGGACATAGAATACTTGGTGGCTACAAGCAGGGGAATGGTATAGTCTGTAGTCACTGTGAGAGAGAGGTCAGCCCTTCCCAGTTTGAAGCTCATGCTGGAATGGCTGCCAGGCGTCAACCGTATCGTCACATTTATACATCTAATGGACTCACACTGCATGATATAGCTATTTCATTGGCAAGTGGACAAAGCCTTACTACTGGAGACAGTGATGATATGTGTTCAGCATGTGGAGATGGAGGGAATTTGATCTGTTGTGATCAATGCCCTCGGGCTTTCCATGCAGCTTGCTTGCAGTTGGAGTCTAATCCTGAAGGTATTTGGTGTTGCCCAAATTGTAAAGACAAAGCAGGTCCTAGTAGGAAAACTGTTGTTGGCGGAACAACAAAACAAATTTTAATAAGGTTGACACGAGTTGTCCGAGCACCAGAGTTCGAAATTGGTGGTTGTGTTGTTTGCAGGGGGCCCGACTTCAGTGTTGCTAAATTTGATGAGCGAACAGTCATACTTTGCGACCAATGTGAGAAGGAGTTCCACGTAGGTTGTTTGCGGAATAGTGGGTTGTGTGATTTAAAAGAGCTTCCCAAGGATAAGTGGTTTTGCTGTGAGGAATGCAATCAGATTCATGTGGCACTACAGAAAGCTGTTTCAAACGGAGCTGAGCTCATTCCAGATCCATTATCAAATATCATAACCAGGAAGCATGCTGCTAAAGGACTATGTATTGATGAAGCGGATAAAGATGTTAGATGGCAAATTTTAAGTGGTAAAAGTCGCTATCCAGAAGACTTCCCGTTACTTTCAAGGACTGCCGCAATTTTTCGAGAGTGTTTTGATCCTATTGTTGCAAAATCTGGTCGCGATCTCATTCCAGTTATGGTGTATGGAAGAAACATCTCTGGGCAAGAGTTTGGAGGGATGTATTGTGTCGTCTTAACTGTGAGGTCTGTCGTTGTGTCTGCTGCTCTTCTTAGAATTTTTGGTCGGGAAGTGGCCGAGCTTCCCATAGTGGCCACAAGTAGGGATTATCAAGGAAAGGGTTATTTTCAAGCACTGTTCTATTGCATCGAGGGACTACTTTGCTCCCTAAACGTGGAAAACCTGGTCCTCCCTGCAGCTGAGGAAGCTGAATCAATTTGGACAAAGAAACTCGGTTTCAATAGGATGAGCGAAGAACAATTGAAGAAATATATGAGAGAGGTTCAGCTGACAATTTTTAAAGGAACATCCATATTGGAGAAGGGGGTGCCGAAGATGGAAGAGTGA 2595 42.85 MGEGDVCLDVLTNVAEEKESASRFELKRDHQCLVDNTEHEPFLSKRQAKEVSNDDIRSEVSNPVISPKENQISFQDISSQPAELENSNQVECGDITSSCSGNLSSLSDGEHRENDTCRNQSEPSEATQVSRFVLEIPKEASSTGIRKITFRFSKRKEDCNYHSHGSVYRAVTGSYGEEHAPMDDAYLDTPAQMYRKGASNMELKMSKKVLPNNYPTNVKKLLSTGILDEARVKYISTTGKIELPGIIKGGGYMCGCSSCNFSNVLSAYEFEQHAGVKTRHPNNHIFLDNGRPIYSVIQEIRTAPLSMLDKVIKDVAGSSVNADSFEAWKESFLKKEASVEAENNNIGVSGSSHFISCSSQALEASIGSTSCFIVPDNPVEHHMHMEMVEEQKYVKKEISNMYKSVFQQKKSTGGAKKRDNDLHRLLFMPNGLPDGAELAYFVKGHRILGGYKQGNGIVCSHCEREVSPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLASGQSLTTGDSDDMCSACGDGGNLICCDQCPRAFHAACLQLESNPEGIWCCPNCKDKAGPSRKTVVGGTTKQILIRLTRVVRAPEFEIGGCVVCRGPDFSVAKFDERTVILCDQCEKEFHVGCLRNSGLCDLKELPKDKWFCCEECNQIHVALQKAVSNGAELIPDPLSNIITRKHAAKGLCIDEADKDVRWQILSGKSRYPEDFPLLSRTAAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLTVRSVVVSAALLRIFGREVAELPIVATSRDYQGKGYFQALFYCIEGLLCSLNVENLVLPAAEEAESIWTKKLGFNRMSEEQLKKYMREVQLTIFKGTSILEKGVPKMEE 864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9804883 9809647 - Conep13aG0136000.1 Cone13ag1327 451714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1327 864 Pfam Tify domain binding domain 245 299 IPR032308 -
Cone13ag1327 864 Pfam Tify domain binding domain 450 499 IPR032308 -
Cone13ag1327 864 PANTHER AUTOIMMUNE REGULATOR 44 861 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Cone13ag1327 864 SMART PHD_3 516 557 IPR001965 -
Cone13ag1327 864 SMART PHD_3 592 649 IPR001965 -
Cone13ag1327 864 CDD PHD1_AIRE 516 556 - -
Cone13ag1327 864 ProSitePatterns Zinc finger PHD-type signature. 593 648 IPR019786 -
Cone13ag1327 864 FunFam PHD zinc finger protein 591 651 - -
Cone13ag1327 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 578 IPR013083 -
Cone13ag1327 864 Pfam PHD-finger 517 556 IPR019787 -
Cone13ag1327 864 Gene3D - 695 857 - -
Cone13ag1327 864 MobiDBLite consensus disorder prediction 36 56 - -
Cone13ag1327 864 ProSitePatterns Zinc finger PHD-type signature. 517 556 IPR019786 -
Cone13ag1327 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 591 651 IPR013083 -
Cone13ag1327 864 SUPERFAMILY FYVE/PHD zinc finger 592 648 IPR011011 -
Cone13ag1327 864 FunFam PHD finger family protein 691 858 - -
Cone13ag1327 864 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 743 836 IPR016181 -
Cone13ag1327 864 ProSiteProfiles Zinc finger PHD-type profile. 590 651 IPR019787 -
Cone13ag1327 864 ProSiteProfiles Zinc finger PHD-type profile. 514 559 IPR019787 -
Cone13ag1327 864 MobiDBLite consensus disorder prediction 36 69 - -
Cone13ag1327 864 MobiDBLite consensus disorder prediction 103 127 - -
Cone13ag1327 864 SUPERFAMILY FYVE/PHD zinc finger 512 562 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1327 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1327 Cone-Chr13:9804883 Cone5ag1271 Cone-Chr5:6081321 1.45E-169 dispersed
Cone1ag1303 Cone-Chr1:56307972 Cone13ag1327 Cone-Chr13:9804883 1.95E-39 wgd
Cone13ag1327 Cone-Chr13:9804883 Cone19ag1312 Cone-Chr19:8830190 0 wgd
Cone13ag1327 Cone-Chr13:9804883 Cone5ag0283 Cone-Chr5:1205653 1.60E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g694 . . . . Bpe04g01561 . Bma04g01614 . Cmo06g00314 Cmo14g00154 . . . . . . Cpe08g01153 . . . . . . . . . . . . . . Cone3ag0322 . Cone13ag1327 Cone19ag1312 . . . Cme04g02602 . . Bda03g01749 Bda05g01208 . . . . Sed02g0695 . . Cma06g00312 . Car06g00270 Car14g00139 Cpe03g00132 . Bhi11g02231 Tan08g1981 Cmetu08g1975 . . . . Cla10g01990 Cam10g2058 Cec10g2099 Cco10g2081 Clacu10g2063 Cmu10g2811 Cre10g2204 Lsi03g02089 Csa03g03200 Chy04g02130 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag1235 . 158 939 PHD Transcription Factor Family AT2G36720 50.8 5.0e-224 775.4
Cone19ag1312 . 5 872 PHD Transcription Factor Family AT3G53680 56.5 2.2e-265 912.5
Cone13ag1327 . 1 864 PHD Transcription Factor Family AT3G53680 55.0 3.3e-261 898.7
Cone3ag0322 . 378 507 PHD Transcription Factor Family AT3G53680 56.2 2.6e-40 164.9
Cone5ag0283 . 418 547 PHD Transcription Factor Family AT3G53680 52.3 2.3e-36 151.8
Cone19ag0716 . 11 651 PHD Transcription Factor Family AT5G22260 51.6 1.1e-185 647.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44681 PF00861 Ribosomal_L18p 1.00E-19 CL0267 Cone TR