Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1327 ATGGGAGAAGGAGATGTTTGTTTAGATGTATTGACAAATGTAGCGGAGGAGAAAGAGAGTGCTTCAAGATTTGAATTGAAGCGGGACCATCAGTGTCTGGTAGATAATACTGAACACGAGCCGTTTCTGAGCAAGAGGCAGGCAAAAGAAGTTTCCAATGATGACATACGGTCAGAAGTTTCAAACCCTGTTATTTCTCCTAAAGAGAACCAGATTAGTTTTCAAGATATTTCTAGCCAACCGGCTGAGTTAGAAAACAGTAACCAAGTAGAGTGTGGCGATATTACATCTTCGTGTTCAGGGAATCTGAGTTCCTTGAGTGATGGGGAGCATCGAGAGAATGATACGTGTCGAAATCAGAGCGAGCCATCTGAGGCTACCCAAGTCTCGAGGTTTGTTTTGGAAATTCCCAAGGAGGCTAGTTCGACTGGAATTAGAAAAATTACATTTAGGTTCAGCAAAAGAAAGGAAGACTGTAATTATCATTCACATGGGTCAGTATATCGGGCTGTAACAGGAAGTTATGGTGAGGAGCATGCGCCAATGGATGATGCATATTTGGACACACCAGCACAAATGTATAGAAAGGGTGCTTCTAATATGGAATTGAAAATGTCTAAGAAGGTTCTCCCTAACAATTATCCTACGAATGTCAAGAAACTGCTATCAACTGGCATCCTAGATGAAGCCCGAGTGAAGTATATTTCTACCACAGGCAAGATAGAGCTACCGGGAATTATTAAGGGCGGTGGATATATGTGTGGATGCTCATCATGCAATTTCTCGAATGTTCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTGTCAAAACCAGACATCCGAATAATCATATATTCTTGGACAATGGGAGGCCAATTTATAGTGTCATACAGGAGATCAGGACAGCTCCTCTTAGCATGTTGGATAAAGTGATCAAGGATGTGGCCGGTTCATCTGTCAATGCGGATTCTTTCGAGGCATGGAAAGAAAGTTTCCTTAAAAAAGAGGCAAGTGTTGAAGCAGAAAATAATAACATAGGGGTTTCCGGTTCGTCCCATTTTATAAGTTGCTCCAGTCAAGCTTTGGAAGCGAGCATTGGTTCTACTTCGTGTTTCATAGTACCAGACAACCCTGTAGAACACCATATGCATATGGAGATGGTAGAAGAGCAGAAATATGTCAAGAAGGAAATCTCCAACATGTACAAATCAGTCTTTCAACAAAAGAAAAGTACAGGAGGTGCAAAGAAAAGAGATAATGATTTGCACCGGTTGCTTTTCATGCCAAATGGACTTCCAGATGGAGCCGAACTTGCATACTTTGTCAAAGGACATAGAATACTTGGTGGCTACAAGCAGGGGAATGGTATAGTCTGTAGTCACTGTGAGAGAGAGGTCAGCCCTTCCCAGTTTGAAGCTCATGCTGGAATGGCTGCCAGGCGTCAACCGTATCGTCACATTTATACATCTAATGGACTCACACTGCATGATATAGCTATTTCATTGGCAAGTGGACAAAGCCTTACTACTGGAGACAGTGATGATATGTGTTCAGCATGTGGAGATGGAGGGAATTTGATCTGTTGTGATCAATGCCCTCGGGCTTTCCATGCAGCTTGCTTGCAGTTGGAGTCTAATCCTGAAGGTATTTGGTGTTGCCCAAATTGTAAAGACAAAGCAGGTCCTAGTAGGAAAACTGTTGTTGGCGGAACAACAAAACAAATTTTAATAAGGTTGACACGAGTTGTCCGAGCACCAGAGTTCGAAATTGGTGGTTGTGTTGTTTGCAGGGGGCCCGACTTCAGTGTTGCTAAATTTGATGAGCGAACAGTCATACTTTGCGACCAATGTGAGAAGGAGTTCCACGTAGGTTGTTTGCGGAATAGTGGGTTGTGTGATTTAAAAGAGCTTCCCAAGGATAAGTGGTTTTGCTGTGAGGAATGCAATCAGATTCATGTGGCACTACAGAAAGCTGTTTCAAACGGAGCTGAGCTCATTCCAGATCCATTATCAAATATCATAACCAGGAAGCATGCTGCTAAAGGACTATGTATTGATGAAGCGGATAAAGATGTTAGATGGCAAATTTTAAGTGGTAAAAGTCGCTATCCAGAAGACTTCCCGTTACTTTCAAGGACTGCCGCAATTTTTCGAGAGTGTTTTGATCCTATTGTTGCAAAATCTGGTCGCGATCTCATTCCAGTTATGGTGTATGGAAGAAACATCTCTGGGCAAGAGTTTGGAGGGATGTATTGTGTCGTCTTAACTGTGAGGTCTGTCGTTGTGTCTGCTGCTCTTCTTAGAATTTTTGGTCGGGAAGTGGCCGAGCTTCCCATAGTGGCCACAAGTAGGGATTATCAAGGAAAGGGTTATTTTCAAGCACTGTTCTATTGCATCGAGGGACTACTTTGCTCCCTAAACGTGGAAAACCTGGTCCTCCCTGCAGCTGAGGAAGCTGAATCAATTTGGACAAAGAAACTCGGTTTCAATAGGATGAGCGAAGAACAATTGAAGAAATATATGAGAGAGGTTCAGCTGACAATTTTTAAAGGAACATCCATATTGGAGAAGGGGGTGCCGAAGATGGAAGAGTGA 2595 42.85 MGEGDVCLDVLTNVAEEKESASRFELKRDHQCLVDNTEHEPFLSKRQAKEVSNDDIRSEVSNPVISPKENQISFQDISSQPAELENSNQVECGDITSSCSGNLSSLSDGEHRENDTCRNQSEPSEATQVSRFVLEIPKEASSTGIRKITFRFSKRKEDCNYHSHGSVYRAVTGSYGEEHAPMDDAYLDTPAQMYRKGASNMELKMSKKVLPNNYPTNVKKLLSTGILDEARVKYISTTGKIELPGIIKGGGYMCGCSSCNFSNVLSAYEFEQHAGVKTRHPNNHIFLDNGRPIYSVIQEIRTAPLSMLDKVIKDVAGSSVNADSFEAWKESFLKKEASVEAENNNIGVSGSSHFISCSSQALEASIGSTSCFIVPDNPVEHHMHMEMVEEQKYVKKEISNMYKSVFQQKKSTGGAKKRDNDLHRLLFMPNGLPDGAELAYFVKGHRILGGYKQGNGIVCSHCEREVSPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIAISLASGQSLTTGDSDDMCSACGDGGNLICCDQCPRAFHAACLQLESNPEGIWCCPNCKDKAGPSRKTVVGGTTKQILIRLTRVVRAPEFEIGGCVVCRGPDFSVAKFDERTVILCDQCEKEFHVGCLRNSGLCDLKELPKDKWFCCEECNQIHVALQKAVSNGAELIPDPLSNIITRKHAAKGLCIDEADKDVRWQILSGKSRYPEDFPLLSRTAAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLTVRSVVVSAALLRIFGREVAELPIVATSRDYQGKGYFQALFYCIEGLLCSLNVENLVLPAAEEAESIWTKKLGFNRMSEEQLKKYMREVQLTIFKGTSILEKGVPKMEE 864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9804883 9809647 - Conep13aG0136000.1 Cone13ag1327 451714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1327 864 Pfam Tify domain binding domain 245 299 IPR032308 -
Cone13ag1327 864 Pfam Tify domain binding domain 450 499 IPR032308 -
Cone13ag1327 864 PANTHER AUTOIMMUNE REGULATOR 44 861 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Cone13ag1327 864 SMART PHD_3 516 557 IPR001965 -
Cone13ag1327 864 SMART PHD_3 592 649 IPR001965 -
Cone13ag1327 864 CDD PHD1_AIRE 516 556 - -
Cone13ag1327 864 ProSitePatterns Zinc finger PHD-type signature. 593 648 IPR019786 -
Cone13ag1327 864 FunFam PHD zinc finger protein 591 651 - -
Cone13ag1327 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 578 IPR013083 -
Cone13ag1327 864 Pfam PHD-finger 517 556 IPR019787 -
Cone13ag1327 864 Gene3D - 695 857 - -
Cone13ag1327 864 MobiDBLite consensus disorder prediction 36 56 - -
Cone13ag1327 864 ProSitePatterns Zinc finger PHD-type signature. 517 556 IPR019786 -
Cone13ag1327 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 591 651 IPR013083 -
Cone13ag1327 864 SUPERFAMILY FYVE/PHD zinc finger 592 648 IPR011011 -
Cone13ag1327 864 FunFam PHD finger family protein 691 858 - -
Cone13ag1327 864 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 743 836 IPR016181 -
Cone13ag1327 864 ProSiteProfiles Zinc finger PHD-type profile. 590 651 IPR019787 -
Cone13ag1327 864 ProSiteProfiles Zinc finger PHD-type profile. 514 559 IPR019787 -
Cone13ag1327 864 MobiDBLite consensus disorder prediction 36 69 - -
Cone13ag1327 864 MobiDBLite consensus disorder prediction 103 127 - -
Cone13ag1327 864 SUPERFAMILY FYVE/PHD zinc finger 512 562 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1327 Cone-Chr13:9804883 Cone5ag1271 Cone-Chr5:6081321 1.45E-169 dispersed
Cone1ag1303 Cone-Chr1:56307972 Cone13ag1327 Cone-Chr13:9804883 1.95E-39 wgd
Cone13ag1327 Cone-Chr13:9804883 Cone19ag1312 Cone-Chr19:8830190 0 wgd
Cone13ag1327 Cone-Chr13:9804883 Cone5ag0283 Cone-Chr5:1205653 1.60E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44681 PF00861 Ribosomal_L18p 1.00E-19 CL0267 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1327 - - - 0.0