Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1363 ATGGCAGATGAGGGTTTTGAGTCATACCATATTCCACAACAGAGCAGAAGAGAGAAGCTCAGAGTGGTTGGTTCAGCTCAAAACCATCTTTCTTGTGTACAACCTCAAGCTAGTGATCATCATCTACTACTACCTCTCTACGATCCCACGTCGTATATCTCCACTACCGAGTTCACTCACGACTTTCATCATCCTCACCAACACCGATCCGACTCACTCACGAGTCCGGACGAGTCATGTAAAACCAGCCACCACCCGGCAGGTTGTAGTAATATTGTGAAAGAGGAAGGCGTTAATTTGATGGGATTTATGGGAGGAAGCAGCTGCCTCATTAATAATAGTAGTAATACTACTGCTTCTTCCTCCACTTCACCTGATCAATTACATCATCATCCTTACAATTACTTGGATCCAAGATCTTCTGCTATTCTTCCATTAAACCCTACCTCTATTCACGATATTAACAATAGCCCTTTTATTTTCTCCCCACAAAGCCTTCAGAATCTTGACCATGGTAGCTACAACGCGGTTCATGACCAAGTGGTCGCGTTCAGACCGGAAACACTGTCACTCTCGCTCTCTTCTTCCTCTCACCCTTTTGACCTCAACCTTCAAAAGTACGGCTCTGCGATTTACAGCACCCCGGCGCACGACGATATTCATGTTCTCACCTCCGCCACAAATGTCGGCCCATTTACAGCTTACGTTTCGATTTTGAAAGAGTCTAGATTTTTGAAACCTGCTCAACAGTTGTTAGAGGAGTTATTTGATGTTGGAATTCATGGAATCTACTCCGAGAAGATCGTTCCGGATGCTAGTCTAATTGATCCGCCATTGGAGACCTTGAGCTCGTGTACTGGTCATCATGGGATTGTTGATGATGGTGGTGAATGCGGAAGGAAGAAATCTAGGCTAATCTCCATGCTTGATGAGGTTTTCACAAAGTATAAGCAATACTGTCATCAGATTCAGGCAATTGTGACATCGTTTGAGTATGTTTCCGGGCTTGGAAATGCAGCACCATATGCACACTTGGCCGTAAAGGCCATGAGTAAGCAGTTCAGATGCTTGAAGAGTGTGATCACAGACCAGCTTCAGTTCCATAATAAGGCCTCCGGTCAACAATTTCAGCGGTCTCTTCACAACGCTGGATTCCTTGAGCACCAACCTGTCTGGAGACCTCAGAGGGGCCTTCCTGAACGTGCCGTGTCCGTTCTGAGGGCATGGTTGTTTGAGCACTTTCTTCATCCTTATCCTACGGACGGTGACAAACTTATGTTGGCTAAACAAACCGGTTTGTCAAGGAGTCAGGTGTCTAATTGGTTTATCAATGCGAGAGTGAGGCTTTGGAAGCCAATGGTGGAAGAAATACACATGCTCGAAACCAGCCAAGCAGAAAAATCCACACAGAGCCCGGATGAGCTATTAAATACTGCCATATCAAACAACATTAATGGTACTCCCCCCTCAGTAGTTTCACTCGCTTCAGATAAATATCTACACTCTGGATCAAAACGGCATCTTCTTCAAGACATTAGAAACCAAAATCATGATCAAAATCATGATATGACATCAAACTTATCATACAACCTATCAAGCCAATCTGATGTTGGTGTTAGCACAAGCACGGTGGGTGGGGCTGGTAATGGTGGAGTTTCGCTGACGCTTGGTCTTCACCAGAACAACGGTGCGGTGGGTTTTTCCGAGCCGTTTCCGATACATGCAAGAGCTCAACATTTTGGCCTCGACACGAATGGAGATCATCATCAGCATGCAGGAGGGTATATTATGAGCGGATTTGAAATGCATAATCGACATTTCGGGCGGAATATAAGCGAAGGGCAACTCTTGCATGATTTTGTTGGGTGA 1869 45.21 MADEGFESYHIPQQSRREKLRVVGSAQNHLSCVQPQASDHHLLLPLYDPTSYISTTEFTHDFHHPHQHRSDSLTSPDESCKTSHHPAGCSNIVKEEGVNLMGFMGGSSCLINNSSNTTASSSTSPDQLHHHPYNYLDPRSSAILPLNPTSIHDINNSPFIFSPQSLQNLDHGSYNAVHDQVVAFRPETLSLSLSSSSHPFDLNLQKYGSAIYSTPAHDDIHVLTSATNVGPFTAYVSILKESRFLKPAQQLLEELFDVGIHGIYSEKIVPDASLIDPPLETLSSCTGHHGIVDDGGECGRKKSRLISMLDEVFTKYKQYCHQIQAIVTSFEYVSGLGNAAPYAHLAVKAMSKQFRCLKSVITDQLQFHNKASGQQFQRSLHNAGFLEHQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDGDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETSQAEKSTQSPDELLNTAISNNINGTPPSVVSLASDKYLHSGSKRHLLQDIRNQNHDQNHDMTSNLSYNLSSQSDVGVSTSTVGGAGNGGVSLTLGLHQNNGAVGFSEPFPIHARAQHFGLDTNGDHHQHAGGYIMSGFEMHNRHFGRNISEGQLLHDFVG 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9972758 9976009 - Conep13aG0139700.1 Cone13ag1363 451750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1363 622 FunFam BEL1-like homeodomain protein 9 395 457 - -
Cone13ag1363 622 Pfam Homeobox KN domain 409 448 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone13ag1363 622 Gene3D - 395 457 - -
Cone13ag1363 622 SMART prehox3 233 363 IPR006563 -
Cone13ag1363 622 SMART HOX_1 392 456 IPR001356 GO:0003677(InterPro)
Cone13ag1363 622 CDD homeodomain 392 453 IPR001356 GO:0003677(InterPro)
Cone13ag1363 622 Pfam Associated with HOX 238 362 IPR006563 -
Cone13ag1363 622 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 155 486 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone13ag1363 622 SUPERFAMILY Homeodomain-like 394 458 IPR009057 -
Cone13ag1363 622 ProSiteProfiles 'Homeobox' domain profile. 389 452 IPR001356 GO:0003677(InterPro)
Cone13ag1363 622 MobiDBLite consensus disorder prediction 63 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1363 Cone-Chr13:9972758 Cone19ag0426 Cone-Chr19:3526526 1.06E-64 dispersed
Cone10ag0342 Cone-Chr10:1625091 Cone13ag1363 Cone-Chr13:9972758 5.84E-124 wgd
Cone13ag1363 Cone-Chr13:9972758 Cone19ag1357 Cone-Chr19:9008974 0 wgd
Cone13ag1363 Cone-Chr13:9972758 Cone3ag0372 Cone-Chr3:1878156 9.41E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44685 PF01702 TGT 1.60E-93 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1363 - - - 0.0