Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1373 ATGCCAGCCCACGTCGATTTGGAGCAAGGGGTTCATCAGCATTCCGGAATCGGAAGCGACAACAGCTCCATCGACGACGGCGAAGGTTCGTGCTACTCTCAGTTTTTCTCAGCTAACGGGGGGTCCTACGATGAGTACAGGTTTGCTTCGGATTCGAGGAGACTTTCTTTGGGTTCATCAGATGATGGTTCGTTAGAGACGGTGGTGGAGATTGAAAATGGGGTTTCAGAAGTAAAGGTGCTTTTAGGTAAAGTGGAAGTGGAGAGGGACTGCAGAATTTGTCATCTGGGTTTGGAAAGTAATAGCCATGAATCTGGAGTTGCAATTGAATTAGGTTGTTCATGCAAAGAGGATCTAGCTGCTGCTCACAGGCATTGTGCTGAGGCCTGGTTTAAGATTAAGGGCAATAAGACATGCGAGATATGTCATTCCGTAGCGAGGAATGTTCTTGGAGCACATGAACTTGAACTAATCGAACAATCTGTCGAGTCCAACAACACCTCAACAACAGCCACCGTGCCGGGCGCACCATCAGAGCCTCGGAGCTTCTGGCGAGGTCAACGCTTCTTGAATTTCCTGCTTGCTTGCATGGTATTTGCTTTCGTCATATCATGGCTCTTTCACTTCAACGTGCCGTCATAA 642 48.13 MPAHVDLEQGVHQHSGIGSDNSSIDDGEGSCYSQFFSANGGSYDEYRFASDSRRLSLGSSDDGSLETVVEIENGVSEVKVLLGKVEVERDCRICHLGLESNSHESGVAIELGCSCKEDLAAAHRHCAEAWFKIKGNKTCEICHSVARNVLGAHELELIEQSVESNNTSTTATVPGAPSEPRSFWRGQRFLNFLLACMVFAFVISWLFHFNVPS 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10010431 10012315 - Conep13aG0140800.1 Cone13ag1373 451760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1373 213 PANTHER ZINC FINGER, RING-CH-TYPE 17 212 - -
Cone13ag1373 213 Pfam RING-variant domain 91 142 IPR011016 GO:0008270(InterPro)
Cone13ag1373 213 SMART ringv_2 90 143 IPR011016 GO:0008270(InterPro)
Cone13ag1373 213 CDD RING_CH-C4HC3_MARCH 91 143 - -
Cone13ag1373 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 150 IPR013083 -
Cone13ag1373 213 SUPERFAMILY RING/U-box 88 146 - -
Cone13ag1373 213 ProSiteProfiles Zinc finger RING-CH-type profile. 83 149 IPR011016 GO:0008270(InterPro)
Cone13ag1373 213 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1373 Cone-Chr13:10010431 Cone1ag0217 Cone-Chr1:1322891 5.91E-31 dispersed
Cone1ag1243 Cone-Chr1:56066039 Cone13ag1373 Cone-Chr13:10010431 1.04E-67 wgd
Cone10ag0353 Cone-Chr10:1675430 Cone13ag1373 Cone-Chr13:10010431 1.56E-37 wgd
Cone13ag1373 Cone-Chr13:10010431 Cone19ag1368 Cone-Chr19:9052368 3.86E-132 wgd
Cone13ag1373 Cone-Chr13:10010431 Cone3ag0384 Cone-Chr3:1932798 9.77E-70 wgd
Cone13ag1373 Cone-Chr13:10010431 Cone5ag0225 Cone-Chr5:957190 7.29E-68 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1373 - - - 0.0