Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1396 ATGATTGCCGGTTTCTTTGATAAGCTCAAGTACTGTTTCAAACTAAAATATGGCTCTGCCCATCAACCACCACAAGGGATTGTTACGAACAGTATTAGAGTCTTCCCTTACAATGTACTGAGATTGGCAACCGGGAATTTCCATCCGTCAAGCCGAATTGGTGGAGGAGGTTATGGAGTAGTATACAAAGGAATTTTAAGAGACGGGACTCAAGTCGCTATTAAATCTCTCTCTGCAGAATCCAAACAAGGATCACAAGAGTTCTTGACTGAGATAAATATGATATCTAACATCATTCATCCAAACCTCGTTAAATTGATCGGTTGTTGTCTTGAAGACAATCATCTGATCTTAGTATATGAATTTCTCGAGAACAATAGCCTCGCCAGTATTCTACTTGGTCCAAAAAATAAGCATGTTGCTTTGGATTGGGCAAAGAGGGCTGCAATCTGCTTAGATACAGCTTGTTGTCTTTGTTTTCTTCATGAGGAAACTAAACCGCCTATTGTCCATAGAGACATCAAGGCTAGTAATATCCTTCTTGATGGAAATTTTCGGCCTAAAATAGGAGATTTTGGGATGGCAAAACTTTTTCCAGACAATATCACTCATATTAGTACTAGAGTGGCCGGAACCATTGGATATATAGCCCCTGAATATGCTCTGTTAGGACAACTTACAAAGAAGGCAGATATTTACAGTTTTGGTGTTCTCATGCTCGAGATAATTAGCGGCAAAAGTAGTAGTAAAGCTGCTTTTGGGGAAGAGCTATTGGTTCTGGTTGAATGGGCGTGGAAATTAAGGGAGGCAGGAAGGCTGCTTGAACTAGTCGATCCGGAACTGGTTGAATATCCTGAACATGAGGTGATGCAGTTTATAAAGGTGGCATTGTTTTGCACACAATCTGGCGCGTCTCAAAGACCTAGTATGAAGCAAATTGTGGAGATGCTTTCAAGAGAGGTTCACCTTAATGAGAAGGCACTAACCAAGCCTGGAGTATACAAGTCCAACACTTCTCAGCATTCTGCTGATGAGGCCAGTTCCGAGGACACATCGTCTTCTCAAACGAAAAAAGGCAGGTCTATAGAAAAGGCAAAAGGACTGTTATTCCGGGCTATAAGGAAAGGAAAGAGTAGAAATGATCCTTAA 1149 41.17 MIAGFFDKLKYCFKLKYGSAHQPPQGIVTNSIRVFPYNVLRLATGNFHPSSRIGGGGYGVVYKGILRDGTQVAIKSLSAESKQGSQEFLTEINMISNIIHPNLVKLIGCCLEDNHLILVYEFLENNSLASILLGPKNKHVALDWAKRAAICLDTACCLCFLHEETKPPIVHRDIKASNILLDGNFRPKIGDFGMAKLFPDNITHISTRVAGTIGYIAPEYALLGQLTKKADIYSFGVLMLEIISGKSSSKAAFGEELLVLVEWAWKLREAGRLLELVDPELVEYPEHEVMQFIKVALFCTQSGASQRPSMKQIVEMLSREVHLNEKALTKPGVYKSNTSQHSADEASSEDTSSSQTKKGRSIEKAKGLLFRAIRKGKSRNDP 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10114667 10117555 - Conep13aG0143100.1 Cone13ag1396 451783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1396 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1396 382 Gene3D Transferase(Phosphotransferase) domain 1 123 339 - -
Cone13ag1396 382 MobiDBLite consensus disorder prediction 356 382 - -
Cone13ag1396 382 CDD STKc_IRAK 65 319 - -
Cone13ag1396 382 MobiDBLite consensus disorder prediction 330 382 - -
Cone13ag1396 382 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524(InterPro)
Cone13ag1396 382 MobiDBLite consensus disorder prediction 331 355 - -
Cone13ag1396 382 ProSiteProfiles Protein kinase domain profile. 47 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1396 382 Gene3D Phosphorylase Kinase; domain 1 12 122 - -
Cone13ag1396 382 SMART serkin_6 47 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1396 382 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 27 353 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cone13ag1396 382 Pfam Protein tyrosine and serine/threonine kinase 51 317 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1396 382 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 329 - -
Cone13ag1396 382 FunFam receptor-like protein kinase FERONIA 16 122 - -
Cone13ag1396 382 SUPERFAMILY Protein kinase-like (PK-like) 24 317 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1396 Cone-Chr13:10114667 Cone6ag1029 Cone-Chr6:5801684 2.79E-135 dispersed
Cone13ag1396 Cone-Chr13:10114667 Cone19ag1385 Cone-Chr19:9145092 2.79E-232 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82055 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1396 - - - 0.0