Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1420 ATGGCAACGGCATACGGCGAACATCTACCGGCGGTGCCGTCATGGCTCAACAGCGGCGACAACGCATGGCAACTGACCGCTTCCACACTGGTCGGACTTCAATCCATGCCGGGACTAGTCATCCTCTACGCCAGCATCGTTAAAAAGAAATGGGCCGTAAACTCCGCCTTCATGGCCCTCTATGCCTTCGCCGCGACACTCATCTGTTGGGTGCTGGTGGGCTACCGGATGGCCTTCGGAGACAAACTCCTCCCGTTTTGGGCCAAAGGGGCCCCAGCTTTGGGCCAGAAGTACCTCAGCAAACAGGCCGTCATCCCAGAAAGCACCCACCATTACGCCAACGGCACGATCGAAACGCCACGTATCGAGCCCTTTTACGCCATGGCAACGCTCGTATACTTCCAGTTCACTTTTGCCGCCATCACGATCATCCTCTTAGCCGGTTCGGTTCTGGGCCGAATGAACATCAAAGCATGGATGCTTTTTGTGCCTCTTTGGCTCATCTTTTCCTACACAGTCGGTGCTTTTAGCCTCTGGGGCGGCGGTTTTTTCTATCACTGGGGCGTCATCGATTACTCCGGCGGTTACGTAATCCATCTCTCTTCAGGCATCGCCGGCTTAACCGCTGCTTACTGGGTGGGTCCGAGGATAAAGGGGGACAGGGAGAGATTTTCGCCGAACAATGTGTTGCTGATGCTCTGCGGAGCAGGGCTTCTGTGGATGGGTTGGTCAGGGTTTAACGGCGGCGCGCCACGTGCGGCGAACGTTGTTGCTTCGGTTGCTGTATTGAACACGAATGTGAGCGCGGCCACTAGTCTTCTTGTCTGGACGTCTCTGGATGTTATCTTCTTTGGGAAGCCGTCGGTGATTGGAGCTGTACAGGGTATGATTACCGGTCTGGCTTGCGTTACGCCGGGCGCAGGGGTGGTGCAAACATGGGCAGCTATTGTGATGGGAATCCTTGCTGGTAGTATTCCATGGGTGTCCATGATGATTCTTCACAAAAAGAGCACTCTACTTCAAAAGGTGGACGACACTTTGGGTGTGTTTCACACTCATGCCGTATCTGGGCTGTTGGGTGGGCTTCTAACTGGGCTCTTAGCAGAACCAACTCTGTGTGGTATGACCCAACCGGTGACGAACACAAAGGGTGCGTTCTACGGATCCGGGATGCAGTTCGTGAAGCAGTTAGTGGCGGCCCTGTTTGTAATAGGATGGAACTTAGTGTCCACAACGATAATACTTCTCTTCATCAGACTGTTCGTTCCATTGAGGATGCCTGAAGAGGATCTCATGATAGGAGACGACGCCGTTCATGGAGAAGAGGCTTATGCTCTTTGGGGAGATGGTGAGAAATTTGACCCGACTAGACACGGGTCAAATATTTCGCCTTATGGGAAAGAGAGATCACAGTCGCCTTATGTCACTGGAGCTAGAGGTGTCACCATCGACCTCTAA 1458 53.36 MATAYGEHLPAVPSWLNSGDNAWQLTASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAATLICWVLVGYRMAFGDKLLPFWAKGAPALGQKYLSKQAVIPESTHHYANGTIETPRIEPFYAMATLVYFQFTFAAITIILLAGSVLGRMNIKAWMLFVPLWLIFSYTVGAFSLWGGGFFYHWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRIKGDRERFSPNNVLLMLCGAGLLWMGWSGFNGGAPRAANVVASVAVLNTNVSAATSLLVWTSLDVIFFGKPSVIGAVQGMITGLACVTPGAGVVQTWAAIVMGILAGSIPWVSMMILHKKSTLLQKVDDTLGVFHTHAVSGLLGGLLTGLLAEPTLCGMTQPVTNTKGAFYGSGMQFVKQLVAALFVIGWNLVSTTIILLFIRLFVPLRMPEEDLMIGDDAVHGEEAYALWGDGEKFDPTRHGSNISPYGKERSQSPYVTGARGVTIDL 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10207071 10209547 - Conep13aG0145500.1 Cone13ag1420 451807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1420 485 NCBIfam ammonium transporter 20 444 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cone13ag1420 485 FunFam Ammonium transporter 4 447 - -
Cone13ag1420 485 Pfam Ammonium Transporter Family 22 444 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cone13ag1420 485 ProSitePatterns Ammonium transporters signature. 191 216 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cone13ag1420 485 Gene3D Ammonium transporter AmtB like domains 3 447 IPR029020 -
Cone13ag1420 485 PANTHER AMMONIUM TRANSPORTER MEP2 12 455 IPR001905 GO:0005886(PANTHER)|GO:0008519(InterPro)|GO:0008519(PANTHER)|GO:0016020(InterPro)|GO:0072488(InterPro)|GO:0072488(PANTHER)
Cone13ag1420 485 SUPERFAMILY Ammonium transporter 15 426 - -
Cone13ag1420 485 PRINTS Rhesus blood group protein signature 354 370 IPR002229 GO:0005886(InterPro)
Cone13ag1420 485 PRINTS Rhesus blood group protein signature 261 283 IPR002229 GO:0005886(InterPro)
Cone13ag1420 485 PRINTS Rhesus blood group protein signature 135 151 IPR002229 GO:0005886(InterPro)
Cone13ag1420 485 PRINTS Rhesus blood group protein signature 316 334 IPR002229 GO:0005886(InterPro)
Cone13ag1420 485 PRINTS Rhesus blood group protein signature 230 248 IPR002229 GO:0005886(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1420 Cone-Chr13:10207071 Cone9ag1205 Cone-Chr9:8692128 1.29E-250 dispersed
Cone13ag1420 Cone-Chr13:10207071 Cone19ag1416 Cone-Chr19:9255309 9.76E-224 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1420 K03320 - mdm:103450680 810.831