Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1426 ATGCATATTTCTCTGAAAGGGGAAGCCAATTGGAGCTGCAGTCCATCTAAAACGAATAAAAAATGGAAGCTTTATTCACTTACTAGAATGTCTAACAAATCTTCCCTCTTCTTCCTCTTTTTCCTCCTTCAGCTTCAAGCTTTCACCTTTCGGCTCGTATCATCCCAAGGGGATGGAGTTTTGGTGACGCAAGCAGATTACAAAGCACTACGAGCCTTCAAGAATGAACTCATTGATTACAGAGGAGTTCTGCGTAGCTGGAATGACAGTGGCTATGGAGCTTGTTCTGGCGGCTGGGTCGGAATCAAGTGTGTGAAGGGACAAGTTATTGCCATACAACTTCCATGGAAAACACTTGGAGGTAAAATCTCAGAGAATATTGGAGCTCTTCAACAACTTAGACGGCTTAGTCTCCATGACAATCTTCTTTCTGGTCCTCTTCCTCTGTCTCTTGGATCCCTCTCCAAACTCAGAGGAGTCTACCTTTTCAATAACCGATTTTCTGGTTCCATCCCTTCATCTATCGGTAAATCTCTTCTTCTTCAAGCTCTTGACTTGAGCAATAATTCATTCACTGGAGAAATTCCTCCCAGTCTTGGAAATTCCAAGAGGTTACTTAGATTGAATCTCAGCCACAATTCTTTGTCGGGTTTAATCCCTAGCAGTCTCACTACTTCCCCTTCTCTTACATTCCTTTCTCTTGAGCATAACAATCTTTCGGGTTCTATACCGGATAACTGGAATGGACCGGAAAATGAGACTTACCAACTTCAGTTTTTGAGCCTTGATCATAATCGTATTACTGGAGATATTCCAGTCTATATTGGGAAGTTGGGTGGGCTTGAAGAGATTTCTCTGAGCCACAACCAGCTTTCCGGGATCATCCCAAGTGAACTAGGCAGGCTTTCAAAGCTACGCCTGCTAGATTTATCAAACAATGATCTCAATGGAAGCTTTCCCTCTACCTTTTCCAATCTCTCTTCTCTTGTTTCCTTGAATCTAGAGAGTAACCGCCTTGATAAACCGATCCCAGAAGCCTTGGACGGGTTGAAGAATCTGTCAGTTCTCAACCTAAGGAATAACCTTTTCGATGGTCAAATCCCGGAAACTATTGGAAACATTTCAGGAATCAGCCAAATCGACTTATCCGATAACAATTTTACTGGAAATATTCCAGCTTCACTTTCCGGTCTAGTCAATCTAACTTCTTTCAATGTCTCTTACAACAATCTTTCCGGCTCGGTCCCACCTCTCCTCTTGAAAAAGTTCAATTCAACTTCCTTTAGAGGAAACCTACAACTATGTGGGTATAGCTCCTCGACCCCATGCCCTCCCCCCTTTTCCCCAGCACTACTACCACCATCACCATCAGAGCAGGCGGCTCCAAAGCGGCACCACGACAAACTTAGTGCAAAGGACATAATTCTGATTGCAGTAGGTGCTGTCCTGGCATTAGTACTTTTACTTCTACTTTGCTTAACTTTACTATGTTGTTTGATGAAGAGAAAGGCTTCTGGAAATAAAAGGAACGGTGAAACCGCAAAGCAGGCTGCTGATGTGGGGGCCACTGAGAAGGCAGTTAGTGTTACCGGAGTCGGCTCGGGTGAAGTAGGTGGAAAACTGGTCCATTTTGATGGCCCGTTTGTTTTTACAGCCGATGATTTACTATGCGCAACTGCAGAGATAATGGGAAAAAGTGCATATGGAACAGCATACAAAGCAACGTTAGAGGATGGTCATGAAGTAGCAGTGAAGAGGTTGAGAGAAAAAACAACAAAAGGACAGGAAGAGTTTGAAACTGAAGCTGCAGAACTCGGAAAAATCCGACACCAAAATCTGTTATCCCTTAGAGCTTACTACTTGGGACCTAAAGGAGAGAAGCTTCTTGTCTATGATCACATGCCTAAAGGGACACTCTCTTCCTTCCTTCATGCACGGGGCCCAGAAAGCACGATAGATTGGGGGACGAGGATGAAGATAGCAATGGGAATAACACGCGGGCTAGGATACCTCCACGGACAAGAGAGCTTATCACATGGAAATCTGACATCTGGCAACATCTTATTGGACGAGAAAACCAAACCGCACATAGCAGATTGCGGACTATCAAGGCTAATGACCACTTCTGCCAACACAAACGTGATTGCTACGGCAGGAACACAGGGTTATAACGCGCCCGAGCTTGCAAAGAATAAGAAGCCGACAACAAAGTCAGATATTTATAGTCTTGGGGTGATCATATTGGAGCTATTGACGGGGAAATCACCAGTTGAAGCGATGAATGGGATGGATTTGCCTCAATGGGTGGCTTCTATAGTGAAGGAAGAGTGGACTAATGAAGTTTTTGATTTGGAGCTAATGAGGGATGCTCCTGTTATAGGTGATGAGCTTCTTAATACTTTGAAACTGGCTTTGCATTGTGTGGATCCCTCGGCAGCTGCTCGGCCTGATGCTCAGTTGATTCTCCAGCAATTGGAGGAGATTAAGCCAGAGCTTGCCTCTGCTTCTGGTGATGATGGAGCAATCAAATTAGCAGAACCAGCAAATGAGCAGTGA 2556 44.37 MHISLKGEANWSCSPSKTNKKWKLYSLTRMSNKSSLFFLFFLLQLQAFTFRLVSSQGDGVLVTQADYKALRAFKNELIDYRGVLRSWNDSGYGACSGGWVGIKCVKGQVIAIQLPWKTLGGKISENIGALQQLRRLSLHDNLLSGPLPLSLGSLSKLRGVYLFNNRFSGSIPSSIGKSLLLQALDLSNNSFTGEIPPSLGNSKRLLRLNLSHNSLSGLIPSSLTTSPSLTFLSLEHNNLSGSIPDNWNGPENETYQLQFLSLDHNRITGDIPVYIGKLGGLEEISLSHNQLSGIIPSELGRLSKLRLLDLSNNDLNGSFPSTFSNLSSLVSLNLESNRLDKPIPEALDGLKNLSVLNLRNNLFDGQIPETIGNISGISQIDLSDNNFTGNIPASLSGLVNLTSFNVSYNNLSGSVPPLLLKKFNSTSFRGNLQLCGYSSSTPCPPPFSPALLPPSPSEQAAPKRHHDKLSAKDIILIAVGAVLALVLLLLLCLTLLCCLMKRKASGNKRNGETAKQAADVGATEKAVSVTGVGSGEVGGKLVHFDGPFVFTADDLLCATAEIMGKSAYGTAYKATLEDGHEVAVKRLREKTTKGQEEFETEAAELGKIRHQNLLSLRAYYLGPKGEKLLVYDHMPKGTLSSFLHARGPESTIDWGTRMKIAMGITRGLGYLHGQESLSHGNLTSGNILLDEKTKPHIADCGLSRLMTTSANTNVIATAGTQGYNAPELAKNKKPTTKSDIYSLGVIILELLTGKSPVEAMNGMDLPQWVASIVKEEWTNEVFDLELMRDAPVIGDELLNTLKLALHCVDPSAAARPDAQLILQQLEEIKPELASASGDDGAIKLAEPANEQ 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10242041 10246847 - Conep13aG0146200.1 Cone13ag1426 451813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1426 851 Gene3D Phosphorylase Kinase; domain 1 563 634 - -
Cone13ag1426 851 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 251 446 - -
Cone13ag1426 851 Pfam Leucine rich repeat 257 315 IPR001611 GO:0005515(InterPro)
Cone13ag1426 851 Pfam Leucine rich repeat 181 239 IPR001611 GO:0005515(InterPro)
Cone13ag1426 851 Pfam Leucine rich repeat 320 362 IPR001611 GO:0005515(InterPro)
Cone13ag1426 851 Gene3D Transferase(Phosphotransferase) domain 1 635 841 - -
Cone13ag1426 851 Pfam Protein tyrosine and serine/threonine kinase 560 769 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1426 851 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 63 225 - -
Cone13ag1426 851 SUPERFAMILY L domain-like 103 441 - -
Cone13ag1426 851 Pfam Leucine Rich Repeat 400 419 IPR001611 GO:0005515(InterPro)
Cone13ag1426 851 Pfam Leucine Rich Repeat 132 154 IPR001611 GO:0005515(InterPro)
Cone13ag1426 851 Pfam Leucine Rich Repeat 157 177 IPR001611 GO:0005515(InterPro)
Cone13ag1426 851 Pfam Leucine Rich Repeat 379 398 IPR001611 GO:0005515(InterPro)
Cone13ag1426 851 MobiDBLite consensus disorder prediction 832 851 - -
Cone13ag1426 851 ProSiteProfiles Protein kinase domain profile. 557 832 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1426 851 Gene3D Ribonuclease Inhibitor 252 446 IPR032675 -
Cone13ag1426 851 Gene3D Ribonuclease Inhibitor 181 251 IPR032675 -
Cone13ag1426 851 Pfam Leucine rich repeat N-terminal domain 65 104 IPR013210 -
Cone13ag1426 851 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 281 839 IPR052451 -
Cone13ag1426 851 FunFam Leucine-rich repeat receptor-like protein kinase 543 633 - -
Cone13ag1426 851 SUPERFAMILY Protein kinase-like (PK-like) 561 830 IPR011009 -
Cone13ag1426 851 CDD STKc_IRAK 563 828 - -
Cone13ag1426 851 Gene3D Ribonuclease Inhibitor 65 180 IPR032675 -
Cone13ag1426 851 PRINTS Leucine-rich repeat signature 205 218 - -
Cone13ag1426 851 PRINTS Leucine-rich repeat signature 302 315 - -
Cone13ag1426 851 SMART LRR_typ_2 398 422 IPR003591 -
Cone13ag1426 851 SMART LRR_typ_2 326 349 IPR003591 -
Cone13ag1426 851 SMART LRR_typ_2 278 301 IPR003591 -
Cone13ag1426 851 SMART LRR_typ_2 350 374 IPR003591 -
Cone13ag1426 851 SMART LRR_typ_2 154 178 IPR003591 -
Cone13ag1426 851 SMART LRR_typ_2 227 250 IPR003591 -
Cone13ag1426 851 SMART LRR_typ_2 302 325 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1426 Cone-Chr13:10242041 Cone1ag1640 Cone-Chr1:57709724 6.67E-176 dispersed
Cone13ag1426 Cone-Chr13:10242041 Cone19ag1424 Cone-Chr19:9287649 1.71E-293 wgd
Cone13ag1426 Cone-Chr13:10242041 Cone5ag0167 Cone-Chr5:695792 4.85E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82057 PF13839 PC-Esterase 5.80E-94 CL0264 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1426 - - - 0.0