Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1451 ATGCCCTCTTTAGGGCTCCACTTTCCTATTCTCACTTTCCCTCTTCTCCTTCTTTATCCTTACCCACTTTCCCGGCCAACCTTCCCGTTCGGATCTCCCACCCGCCACCATTCTCCTTCTCACTCCACCTCTGCTCACTCGCTCCAACTCCATCTTACTACCACCCTTACCCCTACTGCTTCCTATATTTTATCTTCTCCCTGTCTCCGTACGGACGGACATCCATCTTCGCTTCTAGTCATTTTTCTTCAGCTTCTACCAAGCTCTATTTACAGTCAACGCGGATCCATTTCCAACCCTGCTTTCAACGACGATGTTCTGGGATTGATCGTATTTAAGGCCGGTCTTCAAGATCCCAATGCTAAACTCACATCATGGAACGAGGAAGATGATAATCCCTGCTACTGGGTTGGAGTCAAATGCGATCCTATAACCAATAGGGTTTCAGAACTTGTCCTTGATGGGTTCACTCTCTCCGGGCATATCGACCGTGGCCTTCTTAGACTGCAATTTCTCCAAAAGCTATCTCTTTCCCACAATAACTTCACAGGGATCATAAACCCTGCTCTTTCTCACTTTGCAAGTTTGCAAGTCATTGACTTGAGTCACAACAGCTTATCCGGGCCGATACCCGATGAGTTTTTTCAGCAATGCGGATCGTTGAGAATGATTTCACTTGCTAGAAACAACCTCACAGGACATATTCCTGATTCTTTAAGCTCCTGCTTCACCCTGACGGATGTTAACTTATCGTCTAACCAGCTATCTGGGAAATTACCTTCTGGAATATGGTATTTGAGGGGGCTTCAGTATCTTGATTTATCAGATAACTTACTGGAGGAAGGGATTCCTCAAGGAATTGAAAATTTGTATGATTTGAGAGTCTTAAACTTGAAGAAGAATCGATTTTCTGGGACGCTTCCTGAGGATATTGGAGGTTGTTTGCTCTTACAATTTCTTGATCTTAGTGAGAATTTCCTTTCAGGGTATCTTCCAGTGTCAATACGGAGGCTCAATTTGTGCACTTCTCTCAGTTTTCAAGCAAATTCTTTAATAGGAGGAGTTCCGGACTGGATCGGAGAAATGAAAGACCTAGAGAATTTGGATCTATCTGCAAATAACTTTTCGGGTCCGATTCCAAGTTCAATTGGCAATCTTCAATCCTTGAAAAAGTTGAACATATCCATGAATCAGTTAACTGGTACTCTGCCAGAGTCGATGTCAAATTGCACAAACCTTTCAGCCCTTTCTGCAAGCCATAATTTCTTGACTGGTAATCTTCCTTCATGGATTTTTACACCTCATATGCTGAATATTTCTGTTTCTGAGTACAAGATCGGTCGAAGCTTAGAGTATCTTCCATCACCAAATTCAACTTCTCGTCTTGGTCTTCGGGTTTTGGATTTATCTTCAAATGCATTGTCTGGTCTATTCCCTCCTAACATAGGATATCTCAGTAGCTTGCAGCTCCTGAACATGTCCGGGAACTATCTATTTGGTACAATCCCCAGGACAATTGGTAACTTAAAATCGATATTTGCCCTTGACTTGAGTAGCAATCAACTCAATGGAAGCATTCCTTCTGAAATTGTGGGAGCAGTTTCACTGAAGGAGTTGAGGCTAGAGAAGAACTTCCTTACGGGGAAAATTCCCATACAGATTGAAAAATGTTCATCTCTCAAATCTCTGATACTGTCTCAGAACAACCTGAGTGGCCCCATTCCAGCAGCTATTGCAAAGCTCAACAATCTACAGCATGTAGACCTGTCTTTGAATAAACTCTCTGGAAGCTTGCCAAAGGGGCTGATAAATCTTTCCAACCTCCTCTCCTTCAATGTCTCCCATAATAAACTTGAAGGAGAGCTTCCCGTCGGGGGCTTCTTCAATACCATATCTCCCTCATCTGTGTTGGGTAACCCTTCACTTTGTGGCGCTGTTGTGAACCACTCCTGCCCTGCCGTCCATCCCAAACCAATAGTCCTTAACCCTAATTCTTCAGGCACGAATGGCGGTTTTTCCCCTCAACATCATCATGAGAAGAAGATTGTACTCAGCATATCTTCCCTCATTGCCATCGGTGCAGCCGCTTTCATTGCCCTCGGGGTGCTGTCTGTCACTGTCCTCAATATCTGTGCAAGGTCTTCCATGCCTCCTTCTGCTGCTCCCCTTTCATCATCTGCTGGGGAAGATTTCAGTTGTTCGCCAAATATGGATCCAAACTACGGCAAACTTGTCATGTTTTCTGGTGATGCCGACTTCATAGCTGGGGCCCAAGCGTTGCTCAACAAGGACTGTGAGCTTGGTCGTGGTGGGTTTGGAGTCGTTTATAAAACAGTCCTTGGGGATGGACGCTCAGTTGCAATCAAGAAGCTAACTGTCTCAAGTTTGATCAAGTCTCAAGAAGATTTTGAGAGCAAAGTAAAGAAACTTGGGAAAATCAGGCACCATAATCTTGTGGCACTTGAAGGGTATTACTCGACTCCTTCCTTGCAGCTCCTTATCTATGAATACATCCCCAATGGCAGTTTGTACAAGCATCTCCACGGTGGACCTGAAATCAAGTATCTTTCTTGGCGAGAGAGGTTTAACATAGTTCTTGGGATGGCAAAAGGTTTGGTGCATCTGCACCAGAAGAACATCATCCATTACAACCTAAAATCCACGAATGTGCTCCTAGACAGCTCTGGTGAGCCAAAGATTGGGGACTATGGGTTGGCAAGACTGTTGCCAATGTTAGACCATTGCATCTTAAGCAGCAAAATTCAAAGTGCACTAGGGTACATGGCTCCCGAGTTTGCATGTAAAACAGTAAAAATAACTGAGAAAAGTGATGTTTATGGATTTGGAGTCCTAATTTTGGAAGTGGTGACAGGAAAGAGGCCTGTGGAATATATGGAAGATGATGTGGTGGTGCTTTGTGACATGGTGAGGGGGGCATTGGAGGAAGGCAGAGTGGAGGACTGTGTTGATACAAGGCTACTTGGCAACTTCCCAGCAGAGGAGGCGATTCCTGTATTTAAGCTGGGTCTAATCTGTGCTTCTCATGTGCCATCCAACCGTCCAGACATGAGTGAGGTGGTTAATATTCTACAGATGATCCAATGCCCTTATGAAGCGGAGGAGAACTTGGAATGA 3135 44.47 MPSLGLHFPILTFPLLLLYPYPLSRPTFPFGSPTRHHSPSHSTSAHSLQLHLTTTLTPTASYILSSPCLRTDGHPSSLLVIFLQLLPSSIYSQRGSISNPAFNDDVLGLIVFKAGLQDPNAKLTSWNEEDDNPCYWVGVKCDPITNRVSELVLDGFTLSGHIDRGLLRLQFLQKLSLSHNNFTGIINPALSHFASLQVIDLSHNSLSGPIPDEFFQQCGSLRMISLARNNLTGHIPDSLSSCFTLTDVNLSSNQLSGKLPSGIWYLRGLQYLDLSDNLLEEGIPQGIENLYDLRVLNLKKNRFSGTLPEDIGGCLLLQFLDLSENFLSGYLPVSIRRLNLCTSLSFQANSLIGGVPDWIGEMKDLENLDLSANNFSGPIPSSIGNLQSLKKLNISMNQLTGTLPESMSNCTNLSALSASHNFLTGNLPSWIFTPHMLNISVSEYKIGRSLEYLPSPNSTSRLGLRVLDLSSNALSGLFPPNIGYLSSLQLLNMSGNYLFGTIPRTIGNLKSIFALDLSSNQLNGSIPSEIVGAVSLKELRLEKNFLTGKIPIQIEKCSSLKSLILSQNNLSGPIPAAIAKLNNLQHVDLSLNKLSGSLPKGLINLSNLLSFNVSHNKLEGELPVGGFFNTISPSSVLGNPSLCGAVVNHSCPAVHPKPIVLNPNSSGTNGGFSPQHHHEKKIVLSISSLIAIGAAAFIALGVLSVTVLNICARSSMPPSAAPLSSSAGEDFSCSPNMDPNYGKLVMFSGDADFIAGAQALLNKDCELGRGGFGVVYKTVLGDGRSVAIKKLTVSSLIKSQEDFESKVKKLGKIRHHNLVALEGYYSTPSLQLLIYEYIPNGSLYKHLHGGPEIKYLSWRERFNIVLGMAKGLVHLHQKNIIHYNLKSTNVLLDSSGEPKIGDYGLARLLPMLDHCILSSKIQSALGYMAPEFACKTVKITEKSDVYGFGVLILEVVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEDCVDTRLLGNFPAEEAIPVFKLGLICASHVPSNRPDMSEVVNILQMIQCPYEAEENLE 1044
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10386418 10390786 - Conep13aG0148800.1 Cone13ag1451 451838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1451 1044 Pfam Leucine Rich Repeat 195 215 IPR001611 GO:0005515(InterPro)
Cone13ag1451 1044 Pfam Leucine Rich Repeat 172 192 IPR001611 GO:0005515(InterPro)
Cone13ag1451 1044 Pfam Leucine Rich Repeat 317 338 IPR001611 GO:0005515(InterPro)
Cone13ag1451 1044 Pfam Leucine Rich Repeat 293 314 IPR001611 GO:0005515(InterPro)
Cone13ag1451 1044 Gene3D Phosphorylase Kinase; domain 1 743 837 - -
Cone13ag1451 1044 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 102 262 - -
Cone13ag1451 1044 SUPERFAMILY Protein kinase-like (PK-like) 765 1034 IPR011009 -
Cone13ag1451 1044 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 838 1039 - -
Cone13ag1451 1044 CDD STKc_IRAK 767 1031 - -
Cone13ag1451 1044 ProSitePatterns Protein kinases ATP-binding region signature. 767 790 IPR017441 GO:0005524(InterPro)
Cone13ag1451 1044 ProSiteProfiles Protein kinase domain profile. 761 1033 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1451 1044 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 755 837 - -
Cone13ag1451 1044 Gene3D Ribonuclease Inhibitor 381 657 IPR032675 -
Cone13ag1451 1044 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 317 438 IPR046959 -
Cone13ag1451 1044 SUPERFAMILY RNI-like 343 622 - -
Cone13ag1451 1044 Pfam Leucine rich repeat 365 421 IPR001611 GO:0005515(InterPro)
Cone13ag1451 1044 Pfam Leucine rich repeat 464 522 IPR001611 GO:0005515(InterPro)
Cone13ag1451 1044 Pfam Leucine rich repeat 220 279 IPR001611 GO:0005515(InterPro)
Cone13ag1451 1044 Pfam Leucine rich repeat 535 594 IPR001611 GO:0005515(InterPro)
Cone13ag1451 1044 SUPERFAMILY L domain-like 119 447 - -
Cone13ag1451 1044 Pfam Leucine rich repeat N-terminal domain 103 142 IPR013210 -
Cone13ag1451 1044 SMART LRR_typ_2 605 629 IPR003591 -
Cone13ag1451 1044 SMART LRR_typ_2 193 217 IPR003591 -
Cone13ag1451 1044 SMART LRR_typ_2 169 192 IPR003591 -
Cone13ag1451 1044 SMART LRR_typ_2 581 604 IPR003591 -
Cone13ag1451 1044 SMART LRR_typ_2 266 289 IPR003591 -
Cone13ag1451 1044 SMART LRR_typ_2 386 410 IPR003591 -
Cone13ag1451 1044 SMART LRR_typ_2 290 314 IPR003591 -
Cone13ag1451 1044 SMART LRR_typ_2 485 509 IPR003591 -
Cone13ag1451 1044 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 382 655 - -
Cone13ag1451 1044 Gene3D Ribonuclease Inhibitor 102 380 IPR032675 -
Cone13ag1451 1044 FunFam Inactive leucine-rich repeat receptor-like protein kinase 263 357 - -
Cone13ag1451 1044 Pfam Protein tyrosine and serine/threonine kinase 763 1028 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1451 1044 Gene3D Transferase(Phosphotransferase) domain 1 838 1042 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1451 Cone-Chr13:10386418 Cone14ag0675 Cone-Chr14:3469790 3.87E-200 dispersed
Cone13ag1451 Cone-Chr13:10386418 Cone19ag1453 Cone-Chr19:9435329 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82060 PF00076 RRM_1 4.10E-08 CL0221 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1451 - - - 0.0