Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1458 ATGGACAAGTACGAGAAGCTTGAGAAGGTAGGTGAAGGCACATACGGGAAGGTGTACAAGGCGAAGGACAAGGAGACTGGGCAGCTTGTTGCTCTCAAGAAGACGAGGCTAGAGATGGACGAGGAGGGAGTCCCTCCCACCGCTCTTCGTGAGGTCTCCCTGCTTCAGCTGCTTTCTCAATCCCTCTACGTTGTCCGCCTCCTCTGTGTCGAGCACGTTCACCATCACAAAAGCGGTAAGCCCCTCCTCTACCTGGTTTTCGAGTTCCTTGACACCGATCTCAAAAAATTCATCGACTCCCACCGCAAGGGCCAAAACCCTAGACCTCTCCCTCCCTCCCTTGTCCAGAGCTTTCTCTTCCAACTCTGCAAGGGCGTCGCTCACTGTCACGGCCATGGCGTCCTCCATCGAGATCTCAAACCGCAGAACCTCCTCCTCGATCAGGACAAGGGAATCCTCAAAATTGCCGATCTTGGCTTAGGCCGCGCCTTCACTATCCCTCTCAAGAGCTACACACACGAGATTGTCACTCTCTGGTACAGAGCTCCTGAGGTTCTCCTGGGATCTACTCATTACTCCACTGCTGTCGACATGTGGTCTGTTGGTTGTATCTTTGCTGAAATGTTGAGAAGGCAGGCCTTGTTCCCTGGAGATTCAGAGTTCCAACAGTTGTTGCACATATTCAAGCTGCTGGGCACTCCAACAGAGAAGCAGTGGCCTGGAGTTGCTTCTCTTCGAGATTGGCACGTCTATCCACAATGGGAACCTCAGAATCTTGCACGTGCCGTTCCATCCCTTGGCCCTGATGGGCTTGATCTCCTTTCGAAAATGCTTAAATACAATCCAGCTGATAGAATCTCAGCCAAAGCAGCACTGGACCATCCCTACTTTGACAGCCTAGACAAGTCGCAGTTTTGA 918 52.18 MDKYEKLEKVGEGTYGKVYKAKDKETGQLVALKKTRLEMDEEGVPPTALREVSLLQLLSQSLYVVRLLCVEHVHHHKSGKPLLYLVFEFLDTDLKKFIDSHRKGQNPRPLPPSLVQSFLFQLCKGVAHCHGHGVLHRDLKPQNLLLDQDKGILKIADLGLGRAFTIPLKSYTHEIVTLWYRAPEVLLGSTHYSTAVDMWSVGCIFAEMLRRQALFPGDSEFQQLLHIFKLLGTPTEKQWPGVASLRDWHVYPQWEPQNLARAVPSLGPDGLDLLSKMLKYNPADRISAKAALDHPYFDSLDKSQF 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10420415 10422320 - Conep13aG0149500.1 Cone13ag1458 451845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1458 305 PANTHER CELL DIVISION PROTEIN KINASE 3 297 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)
Cone13ag1458 305 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524(InterPro)
Cone13ag1458 305 FunFam Cyclin-dependent kinase 2 93 304 - -
Cone13ag1458 305 Pfam Protein kinase domain 4 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1458 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1458 305 Gene3D Transferase(Phosphotransferase) domain 1 93 304 - -
Cone13ag1458 305 ProSiteProfiles Protein kinase domain profile. 4 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1458 305 SMART serkin_6 4 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1458 305 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Cone13ag1458 305 FunFam Cyclin-dependent kinase B2,2 1 91 - -
Cone13ag1458 305 SUPERFAMILY Protein kinase-like (PK-like) 1 300 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1458 Cone-Chr13:10420415 Cone7ag1950 Cone-Chr7:12440276 1.42E-152 dispersed
Cone19ag1463 Cone-Chr19:9498318 Cone13ag1458 Cone-Chr13:10420415 1.47E-126 transposed
Cone13ag1458 Cone-Chr13:10420415 Cone19ag1462 Cone-Chr19:9497191 2.45E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82061 PF00484 Pro_CA 1.30E-05 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1458 K07760 - csv:101204557 579.326