Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone13ag1462 ATGTCACCCGTCCTCATCCCGTACTCCCTGCTCTTTCTCATGTTCTCATGTGCCGGGCTTCATACCTCCTTCTCCGTTACCGATTCCCACGATGGTTGTATCAGTGCAGCTGCAGTGCTCCAGTCATTGAAAGATGAATGGAAAAATACACCACCAAGCTGGGGAAACTCTGATGATCCCCATGGAACACCCTGGGAAGGAGTCACCTGCAACAATTCTAGAGTTACTGCATTGAGATTATCAACCATGGGCCTCAAGGTTACCCTCAGTGGTGATGTTGGGGGCCTCACCGAATTTAGATCCTTGGACCTGTCATTTAACCGAGGTCTCACTGGTTCCCTCTCTCCGCGCTTAGGAGATCTGCAAAATTTGAACATACTAATTCTAGCTGGCTGTGGCTTTAGTGGTAATATTCCTGAGGAAATGGGAAATCTTTCGGACCTAACATTCTTCATACCTCCTTCCTTGGGTAAACTCTCCAAACTCTACTGGCTTGACTTGGCAGACAACCTGTTAACCAGACCTCTCCCCGTTTCAACTTCCACCTCACCGGGTTTGGACCTCCTTCTGAAAGCTAAGCACTTGCATCTAAATAAAAACCGACTATCAGGTTCCATACCATCTCGACTATTTAGCCCTGAGATGGTATTGATACACATATTATTTGATGGCAATCAATTTTCTGGGAGTATCCCACCAACTTTAGGACTTGTTAAGAGCGTCGAGGTTCTTAGGCTTGATCGAAATTCCCTGGTGGGCGATGTCCCATCTAACCTGAGCAACCTTTTAAACATCAATGAGTTAAATTTAGCCAATAATAATTTGACGGGCCCTCTTCCAAACTTAACTCAAATGATTACGCTCAACTACGTGGACCTCAGTAATAACTCATTTGACCCATCATTAGCTCCCCTTTGGCTTGTAAGCTTGCCGTCTCTCACCACCCTGATTATTGAATATGGATCAATACAAGGTCCTGTACCACATCAGCTTTTTAGCTTACCACAAATCCAGCAAGTGAAATTGAGGAACAATGCGTTTAATGAGACTTTGAACTTGGGGGACAATATCAGTCCACAATTGCAGGTAGTTGATTTGCAAAATAATCAAATATCCTCTGTAACTCTTGGTTCTGGATATACCGAAACATTAATACTTATGGGAAATCTCGTGTGCATCACTGTACTTTCAAATACTAATTATTGCCAGATTCAACAGCAGTCTACAAAGCCATATTCAACCAGCCTGGCTAATTGTGGATTCAAATCATGCCCCCTTGAGCAGAAGCTGATCCCTCAGAGTTGTGAATGTGCCTATCCATATGAGGGAACTTTGTACTTTAGAGGACCCTTGTTCAGGGAGCTGTCAAATGAGAATCTGTTTCATTCACTAGAAATGATCCTGTGGGTGAAACTCAAGCTCACTCCTGGTTCAGTTTCTATTGAAAACCCTTTCTTTAATACTTATGATTATCTTCAAGTGCAATTAGCACTCTTTCCACCCACAGGAAAGTATTTCAATAGGTCAGAGGTTCAGTGGATTGGGTTTCAGTTGAGTAATCAAACTTACAAACCTCCTCCGGAATTTGGACCATATTATTTTATTGCATCTCCTTATGGTTTCTCGGCCACTCACAGGGGACCTTCTATTAGCCCCGCGATGGTAGTAGGAATAGCTATTGGCTGCAGCTTTCTGGTTCTAGGCCTCATTGGGGTTGGAATATATGCCATTCAACAGAAGAGACGGGCAGAAAGGGCAATCGGGATGACCAAGCCATTTGCATCATGGGGTCCAAGCGGCAAAGATAGGGGGGGCGCACCACAGTTAAAGGGAGCGAGATGGTTCTCTTATGATGAACTCAAAAGGTGCACGAATAATATTTCTGTCAGAAACGAGATAGAGTCAGGAGGCTATGGAAAGGTATATAGAGGAATGTTAGTCGATGGACAAGTAGTTGCTATCAAGAGAGCTCAGCAAGGATCCATGCAGGGGGGACTAGAGTTCAAGACTGAAATTGAACTTCTTTCCCGAGTTTACCACAAGAATCTTGTTGGCCTCGTGGGATTTTGTTTTGAGCAAGGAGAACAAATTCTTGTTTATGAGAATTCATGCCTAATGGAACCCTCAGAGACAGCTTATCTGATTGTTGCTAACCCCCACTTTTGGAAATCTGAGAGGAGATCTGGAATTCAGCTTGATTGGAAGAGAAGACTCTGTATTGCTCTTGGGTCAGCAAGAGGACTAACTTATCTACACGAGCATGCAAATCCTCCAATAATTCACCGAGATGTGAAGTCGACTAATATCCTCTTGGATGAAAATTTAACTGCAAAGGGTTACCTGGATCCTGAATATTACATCACTCAACAACTAACCGAGAAAAGTGATGTCTATAGTTATGGAGTGGTTATGCTGGATTTGGTTACTGCAAGGCAACCAATTGAGAAAGGTAAATACATTGTTCGCGACGTGCGACTGCTAATGACTCAAAGTGATGAAGAGCATTATGAATTGAGAGGGATAATGGGTTCAGCCATCAGATGCTCGACCAATGTAATTGGGTTTGGGAGGTTTATAGATTTGGCCATGCGTTGTGTAGAAGAATCAGCTGCAGACCGTCCAACTATGAGTGAGGTAGTTAAGACTATTAAAACTATATTACATAATGATGGGATAAATACAAATTCAACATCTGCATCCTCATCTGCCACTGAGTTTTCAACTTTCAAAGGTGCTCTCATAAACATCCCTATAACGATGCTTTACCAAGAAAGGAGGTTAATGAAAGTAGAGCGTTTGATTATAGTGGTGGATACACAATGTCTGCACAAGTTCAACCTAAGTGATGAACATACAAAACATGGTCGCCTATGTTTTAGGGGCTCAACATTTATATGA 2898 42.82 MSPVLIPYSLLFLMFSCAGLHTSFSVTDSHDGCISAAAVLQSLKDEWKNTPPSWGNSDDPHGTPWEGVTCNNSRVTALRLSTMGLKVTLSGDVGGLTEFRSLDLSFNRGLTGSLSPRLGDLQNLNILILAGCGFSGNIPEEMGNLSDLTFFIPPSLGKLSKLYWLDLADNLLTRPLPVSTSTSPGLDLLLKAKHLHLNKNRLSGSIPSRLFSPEMVLIHILFDGNQFSGSIPPTLGLVKSVEVLRLDRNSLVGDVPSNLSNLLNINELNLANNNLTGPLPNLTQMITLNYVDLSNNSFDPSLAPLWLVSLPSLTTLIIEYGSIQGPVPHQLFSLPQIQQVKLRNNAFNETLNLGDNISPQLQVVDLQNNQISSVTLGSGYTETLILMGNLVCITVLSNTNYCQIQQQSTKPYSTSLANCGFKSCPLEQKLIPQSCECAYPYEGTLYFRGPLFRELSNENLFHSLEMILWVKLKLTPGSVSIENPFFNTYDYLQVQLALFPPTGKYFNRSEVQWIGFQLSNQTYKPPPEFGPYYFIASPYGFSATHRGPSISPAMVVGIAIGCSFLVLGLIGVGIYAIQQKRRAERAIGMTKPFASWGPSGKDRGGAPQLKGARWFSYDELKRCTNNISVRNEIESGGYGKVYRGMLVDGQVVAIKRAQQGSMQGGLEFKTEIELLSRVYHKNLVGLVGFCFEQGEQILVYENSCLMEPSETAYLIVANPHFWKSERRSGIQLDWKRRLCIALGSARGLTYLHEHANPPIIHRDVKSTNILLDENLTAKGYLDPEYYITQQLTEKSDVYSYGVVMLDLVTARQPIEKGKYIVRDVRLLMTQSDEEHYELRGIMGSAIRCSTNVIGFGRFIDLAMRCVEESAADRPTMSEVVKTIKTILHNDGINTNSTSASSSATEFSTFKGALINIPITMLYQERRLMKVERLIIVVDTQCLHKFNLSDEHTKHGRLCFRGSTFI 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10439336 10444448 + Conep13aG0149900.1 Cone13ag1462 451849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone13ag1462 965 ProSitePatterns Serine/Threonine protein kinases active-site signature. 759 771 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1462 965 Gene3D Ribonuclease Inhibitor 214 282 IPR032675 -
Cone13ag1462 965 Gene3D Ribonuclease Inhibitor 148 213 IPR032675 -
Cone13ag1462 965 Gene3D Ribonuclease Inhibitor 36 147 IPR032675 -
Cone13ag1462 965 SUPERFAMILY L domain-like 61 429 - -
Cone13ag1462 965 ProSiteProfiles Protein kinase domain profile. 627 887 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1462 965 SMART serkin_6 627 887 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone13ag1462 965 Pfam Leucine Rich Repeat 123 145 IPR001611 GO:0005515(InterPro)
Cone13ag1462 965 Gene3D Transferase(Phosphotransferase) domain 1 720 777 - -
Cone13ag1462 965 Gene3D Transferase(Phosphotransferase) domain 1 778 908 - -
Cone13ag1462 965 Gene3D Ribonuclease Inhibitor 283 420 IPR032675 -
Cone13ag1462 965 PANTHER RECEPTOR-LIKE PROTEIN 55 52 883 - -
Cone13ag1462 965 FunFam Predicted protein 184 405 - -
Cone13ag1462 965 Pfam Protein tyrosine and serine/threonine kinase 628 778 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1462 965 Pfam Protein tyrosine and serine/threonine kinase 780 882 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone13ag1462 965 SUPERFAMILY Protein kinase-like (PK-like) 616 890 IPR011009 -
Cone13ag1462 965 Gene3D Phosphorylase Kinase; domain 1 601 702 - -
Cone13ag1462 965 FunFam Leucine-rich repeat family protein 35 181 - -
Cone13ag1462 965 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 605 702 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1462 Cone-Chr13:10439336 Cone3ag0877 Cone-Chr3:4481877 1.21E-235 dispersed
Cone10ag0454 Cone-Chr10:2116669 Cone13ag1462 Cone-Chr13:10439336 1.82E-69 wgd
Cone13ag1462 Cone-Chr13:10439336 Cone19ag1467 Cone-Chr19:9518524 0 wgd
Cone13ag1462 Cone-Chr13:10439336 Cone3ag0487 Cone-Chr3:2395717 7.50E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82062 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone13ag1462 - - - 0.0