Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0011 ATGGCTTCAGCACTTAGATCCAAGCCCTCAAGGGAAACAGCTTCAACAGTTTCTCAATTCAGATACTTTATATTCAATTACATGCACGCCGGTCGGATGCCCAATTCTCACTACACGAATCGGAGCAAGTGGGACGACCTCTATACCAACATCCCTCGCCACTTCACTTCTTTCAAGCCCCTCTCTCTTCGTGGCGATTTTGTCGAAAAGGGTGGTCAATTTCCCGACAATCGCAGAATTTCCCATACTTGTGGCAAGAATTGGAGCAACAAGTTGAGCAGTGGATGTACTGTTATGAGCACGTTTGGGGATCCACCTGAGGTCTGGACTGGGGATGGAATTGTAATTCGATCAGGCAATTCAACCTATAATCTGGTCCGTGGAGGTGGAGGTGGAGGTGGAGGTGGAAATGGAGGTGGTGGTGTTGGTGGAGGTGGAGGTGGAGGTGGGGGTGGCAGTCCTGGTTCCGGTGGAGGACCGGGCTCAAATTCAAAGGATGGGTGTTGGGGTGGTTCCAGCTTGGGGCCTAACTTTCCGACCCCGAAAGAGATATGTAAAGGTCTCGATAAGTTTGTTATTGGTCAGGAGAAAGCTAAGAAGGTGCTCTCTGTCGCAGTTTACAATCACTACAAGAGAATATATCACGAGTCAGTGCAGAAGTGGCCTACAGGGGAATTGAATAATGGAAAACCAAATTCAACAGATGATGAACATGTAGAACTTGAGAAAAGTAACATTCTTCTGATGGGACCAACAGGCTCAGGGAAGACATTACTTGCCAAAACCTTGGCACGTTTTGTTAATGTTCCATTTGTAATTGCAGATGCTACAACTCTGACACAGGCAGGATACGTAGGGGAAGATGTGGAATCCATATTATATAAGCTCCTTATGGTTGCTGATTATAATGTGGCAGCTGCACAGCAAGGAATTGTCTACATAGATGAAGTTGACAAAATTACAAAAAAGGCTGAGAGCCTTAACATTAGTAGAGATGTGTCGGGGGAGGGTGTGCAGCAGGCATTACTAAAGATGCTTGAAGGAACAATTGTCAATGTTCCTGAGAAGGGAGCCAGAAAACACCCTAGAGGTGAAAATATTCAGATAGACACAAAAGATATCCTCTTCATATGTGGGGGTGCCTTTGTTGACTTAGAGAAGACTATCTCAGAAAGGCGACAAGATTCTTCAATTGGGTTTGGTGCCCCAGTTCGTGCTAACTTGAGGACTGGTTCTGTGACAGATGCTGCTGTCACATCATCTTTATTGGAGACTGCGGAAAGCAGTGATCTCATTTCATATGGGTTGATACCTGAGTTTGTTGGAAGATTTCCAATCCTTGTCAGTTTGTCTGCCTTAACTGAATATCAACTCATTCAGGTTCTGACAGAGCCAAAAAATGCTCTAGGAAAGCAGTATAGAAAAATGTTCCAGATGAATAGTGTGAAGCTGCATTTTACCGACAATGCCTTAAGATTAATTGCTAAAAAGGCAATATCTAAGAACACCGGTGCAAGAGGCTTACGGTCAATACTAGAAACTTTACTGATGGATTCCATGTATGAGATTCCTGATGTGAGGACTGATGATAATATAATAGATGCTGTTGTGGTTGATGAAGAAGCTGTTGGGTCAGACGGCCGTGGTTGTGGAGCCAAAATCCTTTATGGAAAGGGTGCTTTGGATAATTACCTTTCACAACAAAAACTTAAAGATACAGAGAACACAAGTAGTCCAGAGGGATCAGATGCAGAGCCGGAAGGAGAAAGTGAACTTCGCTCTGTTGTTGCCAGCATGTAA 1800 44.33 MASALRSKPSRETASTVSQFRYFIFNYMHAGRMPNSHYTNRSKWDDLYTNIPRHFTSFKPLSLRGDFVEKGGQFPDNRRISHTCGKNWSNKLSSGCTVMSTFGDPPEVWTGDGIVIRSGNSTYNLVRGGGGGGGGGNGGGGVGGGGGGGGGGSPGSGGGPGSNSKDGCWGGSSLGPNFPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHESVQKWPTGELNNGKPNSTDDEHVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANLRTGSVTDAAVTSSLLETAESSDLISYGLIPEFVGRFPILVSLSALTEYQLIQVLTEPKNALGKQYRKMFQMNSVKLHFTDNALRLIAKKAISKNTGARGLRSILETLLMDSMYEIPDVRTDDNIIDAVVVDEEAVGSDGRGCGAKILYGKGALDNYLSQQKLKDTENTSSPEGSDAEPEGESELRSVVASM 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 85487 89910 + Conep14aG0001200.1 Cone14ag0011 451860

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0011 599 MobiDBLite consensus disorder prediction 568 583 - -
Cone14ag0011 599 Gene3D - 452 551 - -
Cone14ag0011 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 539 IPR027417 -
Cone14ag0011 599 SMART AAA_5 242 404 IPR003593 GO:0016887(InterPro)
Cone14ag0011 599 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 172 451 - -
Cone14ag0011 599 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 89 570 IPR050052 GO:0005524(PANTHER)|GO:0005759(PANTHER)|GO:0016887(PANTHER)|GO:0051603(PANTHER)
Cone14ag0011 599 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 452 552 - -
Cone14ag0011 599 MobiDBLite consensus disorder prediction 568 599 - -
Cone14ag0011 599 SMART ClpB_D2_small_2 453 544 IPR019489 -
Cone14ag0011 599 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 177 541 IPR004487 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cone14ag0011 599 Pfam C-terminal, D2-small domain, of ClpB protein 453 522 IPR019489 -
Cone14ag0011 599 Pfam AAA domain (Cdc48 subfamily) 242 446 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone14ag0011 599 Gene3D - 173 451 IPR027417 -
Cone14ag0011 599 CDD RecA-like_ClpX 179 450 - -
Cone14ag0011 599 MobiDBLite consensus disorder prediction 144 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0011 K03544 - - mdm:103439868 884.789
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0011 Cone-Chr14:85487 Cone15ag0012 Cone-Chr15:103922 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1042 . . . . . . Bma10g01303 . . Cmo18g01359 . . . . . . . Bhi01g01488 Tan01g0095 . . . . . . . . . . . . . . Cone14ag0011 . . . . . . . . . . . . . . . . Cma16g00047 . . Car18g01245 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001359 1 5 2 3 1 2 5 2 1 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 3 2 3 4 3 75