Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone14ag0012 | ATGGACTTGGACAGCATCGAATGCGTTTCATCTTCAGATGGTCTGGATGAGGACGAGATCCATCAACACCACACACTTCTTTATCCACAGCCTCATCATCATCATCCCGAGCTTTCATCCTCAAAATCTCGGCATGGCAGCAACACAATGGGTCCCACTGCAATTGCTCCATCAACCAGTGTCCATGAGTTGCTAGATTGCCCCGTTTGCACCAACTCCATGTACCCACCTATCCACCAGTGCCACAACGGGCACACTCTGTGCTCGACGTGTAAAACAAGGGTACACAACCGTTGCCCCACTTGTAGGCAAGAGCTAGGAGACATTAGGTGTTTAGCCCTAGAAAAGGTAGCCGAGTCGCTTGAACTCCCCTGCAAGTACTACTCATTGGGGTGCCCTGAGATCTTTCCCTACTATAGCAAAGTTAAGCACGAGTCCCTGTGCAATTTCAGACCATATAACTGCCCTTATGCGGGATCAGAGTGTTCAGTTGTTGGCGATGTTCCATTCTTGGTTGCCCATCTCAGAGATGATCACAAGGTAGACATGCACACTGGATCCACATTCAACCATCGCTATGTCAAGTCCAATCCTCGAGAAGTTGAGAATGCCACTTGGATGCTTACGGTTTTCCATTGTTTCGAGCACTACTTCTGCCTTCATTTTGAAGCCTTCCAGCTAGGCATGGCCCCTGTTTACATGGCATTCCTCCGTTTCATGGGTGATGAAAATGAGGCTCGGAACTATAGCTACAGTCTCGAGGTTGGAGGGAATGGAAGGAAACTGATATGGGAGGGCAGCCCACGAAGTGTTAGGGATAGCCATAGAAAGGTGAGGGACAGCCATGACGGACTCATAATCCAAAGAAACATGGCTCTGTTCTTCTCGGGTGGGGACAGGAAGGAGCTTAAGTTGAGAGTCACAGGGAGGATATGGAAGGAACAACAGAACCCGGAAGCCGGGGTGTGCACACCAAATCTCTGTAGCTAA | 990 | 49.39 | MDLDSIECVSSSDGLDEDEIHQHHTLLYPQPHHHHPELSSSKSRHGSNTMGPTAIAPSTSVHELLDCPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKVKHESLCNFRPYNCPYAGSECSVVGDVPFLVAHLRDDHKVDMHTGSTFNHRYVKSNPREVENATWMLTVFHCFEHYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGGNGRKLIWEGSPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPEAGVCTPNLCS | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 90430 | 92245 | + | Conep14aG0001300.1 | Cone14ag0012 | 451861 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone14ag0012 | 329 | SUPERFAMILY | RING/U-box | 57 | 109 | - | - | |
Cone14ag0012 | 329 | CDD | Sina | 181 | 309 | - | - | |
Cone14ag0012 | 329 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 11 | 118 | - | - | |
Cone14ag0012 | 329 | MobiDBLite | consensus disorder prediction | 29 | 55 | - | - | |
Cone14ag0012 | 329 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 120 | 175 | IPR013083 | - | |
Cone14ag0012 | 329 | ProSiteProfiles | Zinc finger RING-type profile. | 67 | 103 | IPR001841 | - | |
Cone14ag0012 | 329 | SUPERFAMILY | TRAF domain-like | 120 | 312 | - | - | |
Cone14ag0012 | 329 | Pfam | Sina, zinc finger | 116 | 191 | - | - | |
Cone14ag0012 | 329 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 177 | 308 | IPR008974 | GO:0005515(InterPro) | |
Cone14ag0012 | 329 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 30 | 119 | IPR013083 | - | |
Cone14ag0012 | 329 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 176 | 308 | - | - | |
Cone14ag0012 | 329 | Pfam | Sina, TRAF-like domain | 211 | 308 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Cone14ag0012 | 329 | CDD | RING-HC_SIAHs | 65 | 103 | - | - | |
Cone14ag0012 | 329 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 67 | 102 | IPR049548 | - | |
Cone14ag0012 | 329 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 119 | 175 | - | - | |
Cone14ag0012 | 329 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 48 | 310 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Cone14ag0012 | 329 | ProSiteProfiles | Zinc finger SIAH-type profile. | 120 | 180 | IPR013010 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone14ag0012 | Cone-Chr14:90430 | Cone5ag0480 | Cone-Chr5:2021704 | 3.93E-171 | dispersed | |
Cone1ag0982 | Cone-Chr1:54923415 | Cone14ag0012 | Cone-Chr14:90430 | 4.33E-228 | wgd | |
Cone11ag0491 | Cone-Chr11:2504830 | Cone14ag0012 | Cone-Chr14:90430 | 1.71E-194 | wgd | |
Cone14ag0012 | Cone-Chr14:90430 | Cone15ag0013 | Cone-Chr15:114500 | 4.29E-230 | wgd | |
Cone14ag0012 | Cone-Chr14:90430 | Cone18ag1014 | Cone-Chr18:7508112 | 1.14E-197 | wgd | |
Cone14ag0012 | Cone-Chr14:90430 | Cone5ag0687 | Cone-Chr5:2947117 | 2.41E-234 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone14ag0012 | K04506 | - | mdm:103443714 | 635.18 |