Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0012 ATGGACTTGGACAGCATCGAATGCGTTTCATCTTCAGATGGTCTGGATGAGGACGAGATCCATCAACACCACACACTTCTTTATCCACAGCCTCATCATCATCATCCCGAGCTTTCATCCTCAAAATCTCGGCATGGCAGCAACACAATGGGTCCCACTGCAATTGCTCCATCAACCAGTGTCCATGAGTTGCTAGATTGCCCCGTTTGCACCAACTCCATGTACCCACCTATCCACCAGTGCCACAACGGGCACACTCTGTGCTCGACGTGTAAAACAAGGGTACACAACCGTTGCCCCACTTGTAGGCAAGAGCTAGGAGACATTAGGTGTTTAGCCCTAGAAAAGGTAGCCGAGTCGCTTGAACTCCCCTGCAAGTACTACTCATTGGGGTGCCCTGAGATCTTTCCCTACTATAGCAAAGTTAAGCACGAGTCCCTGTGCAATTTCAGACCATATAACTGCCCTTATGCGGGATCAGAGTGTTCAGTTGTTGGCGATGTTCCATTCTTGGTTGCCCATCTCAGAGATGATCACAAGGTAGACATGCACACTGGATCCACATTCAACCATCGCTATGTCAAGTCCAATCCTCGAGAAGTTGAGAATGCCACTTGGATGCTTACGGTTTTCCATTGTTTCGAGCACTACTTCTGCCTTCATTTTGAAGCCTTCCAGCTAGGCATGGCCCCTGTTTACATGGCATTCCTCCGTTTCATGGGTGATGAAAATGAGGCTCGGAACTATAGCTACAGTCTCGAGGTTGGAGGGAATGGAAGGAAACTGATATGGGAGGGCAGCCCACGAAGTGTTAGGGATAGCCATAGAAAGGTGAGGGACAGCCATGACGGACTCATAATCCAAAGAAACATGGCTCTGTTCTTCTCGGGTGGGGACAGGAAGGAGCTTAAGTTGAGAGTCACAGGGAGGATATGGAAGGAACAACAGAACCCGGAAGCCGGGGTGTGCACACCAAATCTCTGTAGCTAA 990 49.39 MDLDSIECVSSSDGLDEDEIHQHHTLLYPQPHHHHPELSSSKSRHGSNTMGPTAIAPSTSVHELLDCPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKVKHESLCNFRPYNCPYAGSECSVVGDVPFLVAHLRDDHKVDMHTGSTFNHRYVKSNPREVENATWMLTVFHCFEHYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGGNGRKLIWEGSPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPEAGVCTPNLCS 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 90430 92245 + Conep14aG0001300.1 Cone14ag0012 451861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0012 329 SUPERFAMILY RING/U-box 57 109 - -
Cone14ag0012 329 CDD Sina 181 309 - -
Cone14ag0012 329 FunFam E3 ubiquitin-protein ligase SINAT3 11 118 - -
Cone14ag0012 329 MobiDBLite consensus disorder prediction 29 55 - -
Cone14ag0012 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 175 IPR013083 -
Cone14ag0012 329 ProSiteProfiles Zinc finger RING-type profile. 67 103 IPR001841 -
Cone14ag0012 329 SUPERFAMILY TRAF domain-like 120 312 - -
Cone14ag0012 329 Pfam Sina, zinc finger 116 191 - -
Cone14ag0012 329 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 177 308 IPR008974 GO:0005515(InterPro)
Cone14ag0012 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 119 IPR013083 -
Cone14ag0012 329 FunFam E3 ubiquitin-protein ligase SINAT5-like 176 308 - -
Cone14ag0012 329 Pfam Sina, TRAF-like domain 211 308 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cone14ag0012 329 CDD RING-HC_SIAHs 65 103 - -
Cone14ag0012 329 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 67 102 IPR049548 -
Cone14ag0012 329 FunFam E3 ubiquitin-protein ligase SINAT3 119 175 - -
Cone14ag0012 329 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 48 310 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cone14ag0012 329 ProSiteProfiles Zinc finger SIAH-type profile. 120 180 IPR013010 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0012 Cone-Chr14:90430 Cone5ag0480 Cone-Chr5:2021704 3.93E-171 dispersed
Cone1ag0982 Cone-Chr1:54923415 Cone14ag0012 Cone-Chr14:90430 4.33E-228 wgd
Cone11ag0491 Cone-Chr11:2504830 Cone14ag0012 Cone-Chr14:90430 1.71E-194 wgd
Cone14ag0012 Cone-Chr14:90430 Cone15ag0013 Cone-Chr15:114500 4.29E-230 wgd
Cone14ag0012 Cone-Chr14:90430 Cone18ag1014 Cone-Chr18:7508112 1.14E-197 wgd
Cone14ag0012 Cone-Chr14:90430 Cone5ag0687 Cone-Chr5:2947117 2.41E-234 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0012 K04506 - mdm:103443714 635.18