Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0025 ATGAGCTACCCGCAAGAGAAACTCGTAAGGTTTCAGGATGAATGGAACTTAGACAAACCTTCTCAGGGTTTATATTCTGCAGATAATGGAACAAACCCAAGAACGTTTAGAACAAGAGTTCACTCGGTTTCTGAAAAGTTTCAAAGAGGCTTGGAATCAGGTTCTGACCGAATCAAAAGAGTTAAAAAATCATTCAAATCCACTTCCTTCAATAATTTCGTGGCCAAAGGCTTGGGTCCCAGGAAGAAAATCCTTGATCCACAAGGGCCTTTTCTTCAGAAATGGAACAAGATATTTGTAATGTCTTGTGTTCTTGCCGTCTCATTGGATCCTTTGTTCTTCTACGTCCCTGAGATTGATGATGATAGGAAGTGTCTTGGGCTGGACAGGAAGATGGAAATCACAGCTAGTGTTTTGCGTTCATTCACAGACATATTTTATATAGTACATATAATATTTCAATTCCGTACTGGATTTATCGCCCCCTCTTCTAGAGTATTTGGAAGAGGTGTTTTAGTCCATGATGCTTGGGCAATAGCAAAGAGGTATTTGTCCTCATATTTTCTTATTGACATTCTAGCCGTTCTCCCACTTCCGCAGGTGGTGATTCTTATTATTATTCCGAGAATGAGTGGATCAAAGTCGTTGAACACAAAGAATCTGCTGAAATTTGTTGTTTTCTTTCAATATATACCAAGAGTTCTTAGAATCTATCCTCTGTATAAGGATGTCACGAGGACTTCTGGAATACTCACTGAAACTGCATGGGCCGGAGCTGCATTTAATCTTTTTCTTTACATGCTAGCTAGTCATGTATTTGGAGCATTCTGGTACTTGTTTTCTATAGAACGAGAAACCACTTGCTGGCAACGTGCTTGTCAGAAACAGCCTGGCTGCAGCCGTAGGTCACTGTACTGTGATAATAGGGCCTCAGAAAATCAATTTTTGAACGTTTTGAATGCTTCTTGTCCAATACAAGAAGCTAACACAACACTTTTTGATTTTGGAATATTTCTTGATGCACTTCAATCTGGTGTTGTGGAGTCCAGGGATTTCCCACAGAAATTGTTTTACTGTTTCTGGTGGGGCCTAAGAAATCTGAGTTCGCTTGGTCAAAATCTTGCGACCAGTACATATGTTTGGGAAATCTGCTTTGCAGTTTTCATCTCCATCGCTGGCTTGGTTCTATTTTCATTTCTCATCGGAAATATGCAGACATATTTGCAATCCACGACTACTAGACTCGAGGAAATGAGAGTGAAAAGGCGAGATGCTGAACAATGGATGTCACACCGTTTACTCCCTGAGAGTTTGAGGGAGCGGATCAGAAGATACGAACAGTACAAGTGGCAAGAAACCAGAGGTGTTGAGGAAGAGAATCTGGTCCGGAATCTTCCGAAAGATCTCAGAAGGGACATAAAGCGTCATCTCTGCTTAGCTCTTCTCATGAGGGTGCCCATGTTTGAGAAGATGGATGAACAACTACTAGATGCAATGTGTGACCGTCTCAAGCCGGTACTGTACACAGAGGAGAGCTATGTTGTTAGGGAAGGAGACCCAGTTGACGAGATGCTCTTCATTATGCGAGGCAAGCTATTGACCATGACCACTAATGGTGGAAGAACTGGTTTCTTCAATTCTGAATACTTAAAGGCCGGAGACTTTTGTGGAGAAGAACTACTCACATGGGCTCTAGACCCACATTCCTCATCTACTTTACCCATCTCGACTAGAACTGTTAGGGCCCTTACAGAAGTAGAAGCCTTTGCTCTGAAAGAGTATGACCTAAAGTTTGTAGCATCTCAGTTCAGGAGACTTCATAGCAAGCAGTTAAGACACACTTTCCGGCTTTATTCACAGCAGTGGAGGACTTGGGCTGCATGTTTCATACAGGCGGCTTGGCATAGGTATTGTAAGAAGAAGTTGGAAGAGTCTCTACGTGAAGAAGAGAATAGGTTGCAAGATGCATTGGCCAAGGCAGATGGGAGTTCTCCTAGTCTTGGTGCTACTATTTATGCGTCACGGTTTGCTGCAAATGTGCTTAAAGCCTTGAGGCGGAATGGGACGAGGAAGAATAGGGTGCCTGAGAGAATACCTCCCATGATGCTTCAAAAGCCGGCGGAGCCTGATTTTACTTCCGAAGAAAATAGGTAG 2154 42.71 MSYPQEKLVRFQDEWNLDKPSQGLYSADNGTNPRTFRTRVHSVSEKFQRGLESGSDRIKRVKKSFKSTSFNNFVAKGLGPRKKILDPQGPFLQKWNKIFVMSCVLAVSLDPLFFYVPEIDDDRKCLGLDRKMEITASVLRSFTDIFYIVHIIFQFRTGFIAPSSRVFGRGVLVHDAWAIAKRYLSSYFLIDILAVLPLPQVVILIIIPRMSGSKSLNTKNLLKFVVFFQYIPRVLRIYPLYKDVTRTSGILTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWQRACQKQPGCSRRSLYCDNRASENQFLNVLNASCPIQEANTTLFDFGIFLDALQSGVVESRDFPQKLFYCFWWGLRNLSSLGQNLATSTYVWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVEEENLVRNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLYTEESYVVREGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSTLPISTRTVRALTEVEAFALKEYDLKFVASQFRRLHSKQLRHTFRLYSQQWRTWAACFIQAAWHRYCKKKLEESLREEENRLQDALAKADGSSPSLGATIYASRFAANVLKALRRNGTRKNRVPERIPPMMLQKPAEPDFTSEENR 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 203913 207741 - Conep14aG0002600.1 Cone14ag0025 451874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0025 717 SMART cnmp_10 487 618 IPR000595 -
Cone14ag0025 717 SUPERFAMILY Voltage-gated potassium channels 86 409 - -
Cone14ag0025 717 CDD CAP_ED 487 618 IPR000595 -
Cone14ag0025 717 MobiDBLite consensus disorder prediction 689 717 - -
Cone14ag0025 717 FunFam Cyclic nucleotide-gated ion channel 1 414 478 - -
Cone14ag0025 717 Gene3D Helix hairpin bin 413 478 - -
Cone14ag0025 717 Pfam Ion transport protein 96 414 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone14ag0025 717 Coils Coil 639 659 - -
Cone14ag0025 717 Gene3D Jelly Rolls 485 605 IPR014710 -
Cone14ag0025 717 Gene3D - 97 411 - -
Cone14ag0025 717 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 66 706 - -
Cone14ag0025 717 FunFam Cyclic nucleotide-gated ion channel 1 485 603 - -
Cone14ag0025 717 ProSiteProfiles cAMP/cGMP binding motif profile. 487 571 IPR000595 -
Cone14ag0025 717 SUPERFAMILY cAMP-binding domain-like 416 609 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0487 Cone-Chr11:2478267 Cone14ag0025 Cone-Chr14:203913 1.60E-248 dispersed
Cone14ag0025 Cone-Chr14:203913 Cone15ag0027 Cone-Chr15:201417 0 dispersed
Cone14ag0023 Cone-Chr14:193491 Cone14ag0025 Cone-Chr14:203913 2.61E-11 proximal
Cone14ag0024 Cone-Chr14:200364 Cone14ag0025 Cone-Chr14:203913 7.70E-198 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0025 K05391 - csv:101221781 1173.69