Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0026 ATGGAATATTGCAGTGGCATAAGGAGTTTGATTGCTGGACATATAGGAATATTCTTCAAAAGACGGCTCCAATTCAGTGTTATCTGGAAGAGCTTCCCTGCTGCGCCTCGCTTAGTAAATTCGTGTATGAGTGATTTCAGAACTGGTTTAAGAATGATGGTTGATATGGGTGATACCACAAAACGTGGTCCAATTGCTGGTATGTTGCCTGAGAAAGATGAAGATGGTGGATATTTTACTGGAGGGTGGAAAAGGTGTATATATGGTTCTATCTTTGAAACTTCCGTTGAGTTTCCGGGTCATGTACAGCCTTCAACATGGCAACATGCTATTATTCATCATCCTGGTAACTTTAACAAGCTTGCAGGTGAAACATATAGGAAGACTGATGCAGATTTTTTGGATGCTCAAAAAGATATTTACCGGGATGATGGTTCTACTGCCTCAACAGCAGTGATTGTTGGTAGCCATCTCTACGTTACCAATGTTGGAGATTCACGTACTACAATTTCGACGGCTGGAAAAGAAATTCCTCTTTCTGATGATCATAAACCTAATAGAACCGATGAGAGACACAGAATTGAGAGTGCAGGAGGTGTTGTAATGTGGACAGGCAAGGAGGCGTCTTGGCTATGTCTCGTGTTTTCGGTAACCGGATGTTGGAAGAGATTTGTTGTTGCAGACCCAGAAATTCAGGATCAAGAAGTTGATGAAGATTTGGAGGTGCTAGTGCTTGCAAGTGATGGGCTGTGGGATGTGGTTTCCAATGAGGATGTGGTGTTGCTGGCTCAAACAAAAGAGGAACCAGAAGGAGCAGGCTTTCACACGATGTTGTGCCGACAACATAACATGCATTGTCGTTAG 864 42.94 MEYCSGIRSLIAGHIGIFFKRRLQFSVIWKSFPAAPRLVNSCMSDFRTGLRMMVDMGDTTKRGPIAGMLPEKDEDGGYFTGGWKRCIYGSIFETSVEFPGHVQPSTWQHAIIHHPGNFNKLAGETYRKTDADFLDAQKDIYRDDGSTASTAVIVGSHLYVTNVGDSRTTISTAGKEIPLSDDHKPNRTDERHRIESAGGVVMWTGKEASWLCLVFSVTGCWKRFVVADPEIQDQEVDEDLEVLVLASDGLWDVVSNEDVVLLAQTKEEPEGAGFHTMLCRQHNMHCR 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 216001 218032 + Conep14aG0002700.1 Cone14ag0026 451875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0026 287 SUPERFAMILY PP2C-like 112 265 IPR036457 -
Cone14ag0026 287 SMART PP2C_4 77 287 IPR001932 -
Cone14ag0026 287 Pfam Protein phosphatase 2C 118 268 IPR001932 -
Cone14ag0026 287 PANTHER PROTEIN PHOSPHATASE 122 270 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone14ag0026 287 Gene3D - 92 283 IPR036457 -
Cone14ag0026 287 ProSiteProfiles PPM-type phosphatase domain profile. 1 287 IPR001932 -
Cone14ag0026 287 CDD PP2Cc 124 265 IPR001932 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0026 K17506 - - csv:101203681 253.832
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0026 Cone-Chr14:216001 Cone4ag1725 Cone-Chr4:12767565 3.62E-44 dispersed
Cone1ag0964 Cone-Chr1:54855567 Cone14ag0026 Cone-Chr14:216001 6.94E-76 wgd
Cone14ag0026 Cone-Chr14:216001 Cone15ag0028 Cone-Chr15:207232 1.20E-131 wgd
Cone14ag0026 Cone-Chr14:216001 Cone5ag0671 Cone-Chr5:2870663 1.74E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g873 . . . Bda07g01926 . . . . . Cmo18g01333 . . . . . . . . . . . . . . . . . . . . . . Cone5ag0671 Cone14ag0026 Cone15ag0028 . . . Cme06g01081 . Blo09g00036 . . . . . . . . . . Cma18g01303 . Car18g01219 Cpe09g00038 . . . . . . . . . . . . . . . . . Chy06g01251 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004622 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 5 1 1 42