Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0030 ATGGGAGTTGTGACTGTTTCTAGCTCAGCTGCTCGTACTCCAGTTGGATTGAAGGAAAAACTTTCGGTTCATCGATCCATAGTGAACAGACCTTTGAATTCGATTCTAGCATTCAAAGCAGAGAAACCCAATAACACCACTTTGGTTTCACCTCAAGAGCAAATACCTTTGCCCATCGAAACAAACAAAGGGCAAAAGAGGTTAGGGAAGGCTAAGAAGCCTTCAAAGAGAGTGAAAGCTGCTTGCATAGATGAAGCTTCTCCTTGTACCTTGGACGTTGATTACAATGAAGCCGCCGTGAAACTCGAAAACTTGTTCAAGCTCAGTCCTGCAATTGACTCTTCTGAAGTCGAAGAAATGGATGGTATTGTAACGAGGAGAGGGCGGATAAGAGGGAAGAAGGTGGGCAAAATTGACGATAAAAATTTGATGAGAAACCGGATGAAGAAGGTGGAAAGGTTGAATCTTGATAAGAGGATTGCGATTAAATGTGAAAAGGAAGAGAGAACGGTTGCTTCGGTTTTGAAGAAGAAAGACCGAGAAAATGAAAATGACAAAATTGACCGGCTTGTGAGGGATTATTCTGCTTCGACTGATTTGGTTAGCTTGGACTGGAAGAAAATGAAGATCCCTCCAGTGCTTCCTTCATCAGAGCATGTGTGGTTGTTCAAGTTAATGCAACCAATGAAGGCACTTGTTCGAGTGAAAGATGACTTACAGAAAGAGTTGGGAAGAGAACCAACTGAGCTTGAATTAGCAAAGGCTACAAATATGAATGTAGGTCAAGTAAGGAGACACCTTGAGGTTGGTCGAGCTGCAAGAAGTAAGCTCATCAAGCACAATCTTCGACTTATACTGTTTGTAATCAACAAGTACTTTGAGGATTTTGCAAACGGGCCAAAGTTTCAAGACCTTTGTCAGGCAGGAGTGAAGGGCCTTATTACAGCAATAGATCGGTTCGAGCAGAAAAGGAGCTTCCGTCTCTCAACATATGCTCTCTTCTGGATCAGACATTCCATTATCCGTTCATTGACTCTCTCAAGCTTCACCCGTGTTTCCTTCGGCCTTGAATCGGTAAGAGTAGAGATTCAAAGAACAAAACTCGAGTTATCATTTGAGCTTCAGAGATTGCCAACAGAAGAAGAGATAGTTCAAAGAGTCGGGATATCGCCCGAGAGATATCATGAAGTAATGAGGGCTGCAAAACCGGTATTCTCTCTCCATTCAAGGCATATAACAACGCAAGAAGAATTTATCAATGGAATCACAGATGTAGACGGTGTAAACGGTGATAATAGGAGGCAGGCCGCTCTTTTAAGACTCGCTCTTGATGATGTGCTTGATTCCTTAAAGCCTAAGGAGAGCTTGGTAATCAGACAGAGATATGGGCTTGATGGGAAAGGAGATAAAACATTGGGGGAGATTGCTGGTAACTTGAATATATCGAGAGAAATGGTTAGGAAATATGAAGTGAAGGCTCTAATGAAGCTCAAGCATCCGGCTCGAGTGGATTATCTTCGCCGATATGTGATGACATCTGTATCGAGTCAGCCACAGTTCCGTTACACCCAACCGCCATCCAAGGTTCTCCATTTGAGAAACTTGCCATGGGAGTGCACAGAGGAAGAGCTCGTTGAACTTGGGAAGCCATTTGGTAAAGTTGTCAACACAAAGTGCAATGTTGGAGCAAACCGCAATCAGGCCTTTATTGAGTTTGCCGATTTAAATCAGGCTATTGCAATGATTTCATATTATGCGTCATCCTCCGAGCCTGCTCAAGTAAGAGGAAAAACTGTATACCTACAGTATTCCAATAGGCAAGAAATAGTTAACAACAAAGCTACTGCTGATATTGCTGGAAATGTGCTTCTAGTAACCATTGAGGGTGCAGACGCTCGTCTTGTCAGCATTGATGTTCTACACTTGGTCTTTTCAGCTTTTGGGTTTGTGCACAAAATCACGACATTTGAGAAAACAGCTGGATTTCAGGCATTGGTGCAATTTTCGGATGCAGAGACTGCCACTTCTGCAAAGGATGCCTTGGATGGCAGAAGCATCCCTAGGTACCTGCTTTCTGATCATATTGGACTGTGCTCCCTTAAAATAACTTATTCTGCCCACACAGATCTAACCGTGAAATTCCAGAGCCATCGGAGCAGGGACTACACTAATCCTTATCTCCCTGTTGCTCCATCAGCAATAGATGGAAACAGTCAGTTCAGCGAGGGTATGGATGGGAAAAAAATTGAACCTGAGAGTAATGTTCTTCTTGCCTCTATTGAGAACGTGCAATATGCTGTCACTTTGGAGGCTTTGAACATGGTTTTTTCTGCTTTTGGGCCTGTGCAAAAGATTGCCATGTTTGACAAGAACGGAGGACTTCAGGCATTGATCCAGTATCCTGATGTTCATACTGCCGTTGTTGCCAAGGAAGCATTGGAGGGGCACTCAATTTATGATGGAGGGTTTTGCAAGCTTCGCATGTCTTATTCACGCCACACTGATCTCAGCATAAAGGTGAACAATGATCGGAGCAGGGACTATACAATCCCCTTAACTCCTATGGTAGCTTCCCAACCCTTGATCCCTGGCCAACAGCCTGTTCATTCAATGAATCCTTATGCTCAGCAATACAATAGAAATCAGTTCGGGCCATCTCCAGATCAGCAGCCCGGAATGCCTCAGTCTTCTGTAGGATGGGCCCCCGATGGCCCGACGGGGCCGTACTCCATGCCCATACAGAATAATCCGTACATGCCACCAGGGTCTATGCCTCCTCAAATGGGTCCAGGTATGATGCCAAGCCAGAACCGCCCACCACAGACGACATCATCTATGCCTCCCTATCACATGCAGTGA 2859 44.46 MGVVTVSSSAARTPVGLKEKLSVHRSIVNRPLNSILAFKAEKPNNTTLVSPQEQIPLPIETNKGQKRLGKAKKPSKRVKAACIDEASPCTLDVDYNEAAVKLENLFKLSPAIDSSEVEEMDGIVTRRGRIRGKKVGKIDDKNLMRNRMKKVERLNLDKRIAIKCEKEERTVASVLKKKDRENENDKIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHVWLFKLMQPMKALVRVKDDLQKELGREPTELELAKATNMNVGQVRRHLEVGRAARSKLIKHNLRLILFVINKYFEDFANGPKFQDLCQAGVKGLITAIDRFEQKRSFRLSTYALFWIRHSIIRSLTLSSFTRVSFGLESVRVEIQRTKLELSFELQRLPTEEEIVQRVGISPERYHEVMRAAKPVFSLHSRHITTQEEFINGITDVDGVNGDNRRQAALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDKTLGEIAGNLNISREMVRKYEVKALMKLKHPARVDYLRRYVMTSVSSQPQFRYTQPPSKVLHLRNLPWECTEEELVELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKATADIAGNVLLVTIEGADARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLSDHIGLCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDGNSQFSEGMDGKKIEPESNVLLASIENVQYAVTLEALNMVFSAFGPVQKIAMFDKNGGLQALIQYPDVHTAVVAKEALEGHSIYDGGFCKLRMSYSRHTDLSIKVNNDRSRDYTIPLTPMVASQPLIPGQQPVHSMNPYAQQYNRNQFGPSPDQQPGMPQSSVGWAPDGPTGPYSMPIQNNPYMPPGSMPPQMGPGMMPSQNRPPQTTSSMPPYHMQ 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 231793 237941 - Conep14aG0003100.1 Cone14ag0030 451879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0030 952 SUPERFAMILY RNA-binding domain, RBD 759 851 IPR035979 GO:0003676(InterPro)
Cone14ag0030 952 CDD RRM3_PTBPH1_PTBPH2 753 849 IPR034794 -
Cone14ag0030 952 MobiDBLite consensus disorder prediction 878 952 - -
Cone14ag0030 952 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 436 510 IPR013324 -
Cone14ag0030 952 Gene3D - 752 857 IPR012677 -
Cone14ag0030 952 Gene3D - 621 731 IPR012677 -
Cone14ag0030 952 Pfam Sigma-70 region 3 232 275 IPR007624 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone14ag0030 952 Pfam Sigma-70 region 3 361 427 IPR007624 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone14ag0030 952 FunFam Polypyrimidine tract-binding protein homolog 2 515 620 - -
Cone14ag0030 952 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 512 821 - GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0043484(PANTHER)
Cone14ag0030 952 FunFam Polypyrimidine tract-binding protein-like 2 621 731 - -
Cone14ag0030 952 Pfam RNA recognition motif 532 583 IPR000504 GO:0003723(InterPro)
Cone14ag0030 952 Gene3D - 268 345 - -
Cone14ag0030 952 MobiDBLite consensus disorder prediction 934 952 - -
Cone14ag0030 952 Gene3D - 433 515 IPR036388 -
Cone14ag0030 952 Gene3D - 516 620 IPR012677 -
Cone14ag0030 952 Gene3D - 224 267 IPR036388 -
Cone14ag0030 952 Gene3D - 350 402 IPR036388 -
Cone14ag0030 952 Coils Coil 164 184 - -
Cone14ag0030 952 MobiDBLite consensus disorder prediction 878 896 - -
Cone14ag0030 952 PRINTS Major sigma-70 factor signature 328 336 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone14ag0030 952 PRINTS Major sigma-70 factor signature 450 462 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone14ag0030 952 PRINTS Major sigma-70 factor signature 304 317 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone14ag0030 952 PRINTS Major sigma-70 factor signature 486 497 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone14ag0030 952 PRINTS Major sigma-70 factor signature 471 486 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone14ag0030 952 CDD Sigma70_r4 440 498 - -
Cone14ag0030 952 SUPERFAMILY RNA-binding domain, RBD 516 610 IPR035979 GO:0003676(InterPro)
Cone14ag0030 952 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 619 686 - -
Cone14ag0030 952 CDD RRM2_PTBPH1_PTBPH2 620 714 IPR034793 -
Cone14ag0030 952 SUPERFAMILY RNA-binding domain, RBD 635 727 IPR035979 GO:0003676(InterPro)
Cone14ag0030 952 Pfam RRM-like domain 753 830 IPR021790 -
Cone14ag0030 952 MobiDBLite consensus disorder prediction 914 928 - -
Cone14ag0030 952 CDD RRM1_PTBPH1_PTBPH2 526 606 IPR034792 -
Cone14ag0030 952 Pfam Sigma-70 region 2 277 344 IPR007627 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone14ag0030 952 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 356 412 IPR013324 -
Cone14ag0030 952 Pfam Sigma-70, region 4 446 499 IPR007630 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone14ag0030 952 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 195 344 IPR013325 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone14ag0030 952 SMART rrm1_1 754 827 IPR000504 GO:0003723(InterPro)
Cone14ag0030 952 SMART rrm1_1 529 602 IPR000504 GO:0003723(InterPro)
Cone14ag0030 952 NCBIfam sigma-70 family RNA polymerase sigma factor 273 499 IPR014284 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone14ag0030 952 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 528 606 IPR000504 GO:0003723(InterPro)
Cone14ag0030 952 FunFam Polypyrimidine tract-binding protein-like 2 752 857 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0030 K03093 - - vvi:100250120 726.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0030 Cone-Chr14:231793 Cone7ag0504 Cone-Chr7:2323624 1.50E-184 dispersed
Cone1ag0959 Cone-Chr1:54826100 Cone14ag0030 Cone-Chr14:231793 4.50E-228 wgd
Cone14ag0030 Cone-Chr14:231793 Cone15ag0032 Cone-Chr15:223284 0 wgd
Cone14ag0030 Cone-Chr14:231793 Cone5ag0649 Cone-Chr5:2770116 2.60E-234 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g868 Blo06g01076 . . . . . . . Cmo16g00073 Cmo18g01330 . . . . Sed07g0818 . Cpe14g00055 Bhi01g01453 Tan01g0146 Cmetu06g0694 . Hepe07g0087 . . . . . . . . . . . Cone14ag0030 Cone15ag0032 . . . . . . . Bda15g00776 . Bpe12g00373 . . . . . Cma16g00070 Cma18g01301 Car16g00061 Car18g01217 Cpe09g00041 . . . . . . . . Cla05g00949 Cam05g1040 Cec05g1045 Cco05g1039 Clacu05g1031 Cmu05g0981 Cre05g1060 . Csa03g02199 Chy06g01254 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005753 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38