Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0031 ATGGGCACTACTGAAATAGCTAAATTATCTCATGATTTTTTCAATGAACAAGACCAATTCGACGATCTTCTAAGCATTTTTGACGGATTAGAAGGTGTAGCGGAGTTCCCCATGATGGATGAATTAGCTCATGATGAACATGATCAAGTACCCTTCCATGCTAGCTCTAATCAGAAGGAAGAAAATCAAGAGAAGCCAACTAGATTGGTTTCTCGGAAAATCAAGACAAGCTCTACAGAAACTGACCGTGGTCAGCTCGAAAGGTCACCAAAAAGGAAGAGATTGAGAACAACAGCAAGTGCAAATCATGCTCCTCCTTCTATTTCGGATGATCGTGAAGGGAGCTCTGATGGGCAACATAGAATTTCTCACATAACAGTGGAGCGAAACAGGAGAAAGCAAATGAATGAGCACTTGTCTGTGTTGAAATCTCTTATGCCTTGCTTCTACGTCAAAAGGGGAGACCAGGCATCAATAATAGGAGGAGTGGTAGATTACATCAACGAGTTGCAGCAAGTTCTACAATCATTGGAGGCGAAGAAGCAAAGAAAAGTTTATAGTGAAATTCTAAGCCCTAGATCAGCACTAGTTTCAAGTAGCCCAAGAGGCTTACAACTTAGCCCTAGAAAGCCGCCATTAAGTAGCCCTAGGCTAGTTAACTTGCCTATCAGTCCAAGAACCCCACAATCAAGCAGCCCTAACAGGCCACCTAGAGTAATGCAGAAAGCAGCCATGGCTAGCTCATTCGAACCATCGCCCACTTCATCTTCTTCTGCTAACTCCTCCGGCAATATCATTGACCATAATGTTAGCAGTAATTCCAAACATGAGCTTGTTACCAACTCTAAGTCTCCAGTAGCTGAAGTTGAGGTCAAGTTTTCTGGTGCTAACGTTCTTTTGAAAACGGTTTCTCTTCGGATGCCTAGACAGGCTTTTAAAATTGTTTGTGCACTTGAACATCTTGGCCTTGAGATTCTCCACGTAAACATCAGCACCAATGATAATACCATGCTCCATTCTTTCACCATTAAGATTGGAATTGAATGCCAACTCAGTGCAGAGGAGCTCGCTCACCAAATCCAGCAAACATTCTGCTCGTGA 1101 42.87 MGTTEIAKLSHDFFNEQDQFDDLLSIFDGLEGVAEFPMMDELAHDEHDQVPFHASSNQKEENQEKPTRLVSRKIKTSSTETDRGQLERSPKRKRLRTTASANHAPPSISDDREGSSDGQHRISHITVERNRRKQMNEHLSVLKSLMPCFYVKRGDQASIIGGVVDYINELQQVLQSLEAKKQRKVYSEILSPRSALVSSSPRGLQLSPRKPPLSSPRLVNLPISPRTPQSSSPNRPPRVMQKAAMASSFEPSPTSSSSANSSGNIIDHNVSSNSKHELVTNSKSPVAEVEVKFSGANVLLKTVSLRMPRQAFKIVCALEHLGLEILHVNISTNDNTMLHSFTIKIGIECQLSAEELAHQIQQTFCS 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 240995 242561 - Conep14aG0003200.1 Cone14ag0031 451880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0031 366 Coils Coil 163 183 - -
Cone14ag0031 366 MobiDBLite consensus disorder prediction 197 278 - -
Cone14ag0031 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 185 IPR036638 GO:0046983(InterPro)
Cone14ag0031 366 PANTHER TRANSCRIPTION FACTOR FAMA 19 364 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Cone14ag0031 366 SMART finulus 125 176 IPR011598 GO:0046983(InterPro)
Cone14ag0031 366 Pfam Helix-loop-helix DNA-binding domain 121 171 IPR011598 GO:0046983(InterPro)
Cone14ag0031 366 Gene3D - 109 184 IPR036638 GO:0046983(InterPro)
Cone14ag0031 366 MobiDBLite consensus disorder prediction 53 94 - -
Cone14ag0031 366 MobiDBLite consensus disorder prediction 53 119 - -
Cone14ag0031 366 MobiDBLite consensus disorder prediction 247 278 - -
Cone14ag0031 366 FunFam Transcription factor SPEECHLESS 111 185 - -
Cone14ag0031 366 CDD bHLH_AtFAMA_like 122 195 - -
Cone14ag0031 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 170 IPR011598 GO:0046983(InterPro)
Cone14ag0031 366 MobiDBLite consensus disorder prediction 220 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0031 Cone-Chr14:240995 Cone4ag0399 Cone-Chr4:1815296 2.38E-40 dispersed
Cone1ag0958 Cone-Chr1:54816641 Cone14ag0031 Cone-Chr14:240995 4.51E-86 wgd
Cone14ag0031 Cone-Chr14:240995 Cone5ag0651 Cone-Chr5:2784451 8.08E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44693 PF13832 zf-HC5HC2H_2 1.60E-26 CL0390 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0031 K20558 - rcu:8274388 343.199