Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0033 ATGGAGCAAAATATTGTATTTCCAAAGAAATTTACAAAAGAGGACTCCAAACGGCCCTATGAACCCAACGCCGCCACAACCGTTGGTCCCAGAGTTGTAAGGATATTGATCACAGACACCGACGCCACAGACTCCTCCAGCGACGAAGAAGGTGGCCTCACGCGCCGCCTGAGAGGCAAGCGGTTTGTCAGCGAGATCAACATCGAAGCAGGCGGCTGCAGAGGCAACAGAAGCACTCCAAACAACAGAAAAATAATCGCCGGAGAGAAACCGCTTAAACCGTCAGCGAAAATCGGTAACGGAAAGAAGTTTCGAGGTGTGAGGCTTCGGCCTTGGGGTAAATGGGCGGCGGAGATTAGAGATAGCAGTCGTGGTCAACGCGTATGGTTAGGCACTTTCGACACTGCAGAAGAAGCCGCCATGGTTTACGACAAAGCCGCTATTCATCTCAAGGGACCTGACGCTATAACTAATTTCGTTATTCCACCGCCGCGAAATCCGGAAATTACAGTTCCTTCAGTTTCAAGTTCAAGTTCGGTGGCCGGTTACGAATCTGGCGAAGAGTGTCGAAATCTATCTTCTCCGACTTCTGTTCTCCACTTCAGAAGTAGTACTGCTACTGATCAACTGTCTATCGAAGAGCCTGATCTTCCAGAACCGGTTGCTGAGCTCGAACCGCCTCCGTTTATGACGCAGGAATGTGAACCGCCGCTGATCGAAGAACCTTTACCAGATTATGAAGGGGAAACGAGCTTCTCTGCCTACTCCGGCGAGTATTTAGCTCGGGACTTGCAGTACATGGACGATATTTTCAAGTTCCCTAACTTGGAGGAATTTCCAATGCTGTCGGAGCCGTTCTACGACGACGACGTGATGATGGAAATACCGGAAAGTATGTGGTTTGAGGATTTCAAGACGTCGGCGACTGGGCAAGCAGATGACTGTTTTCAAGACTTGTTTGGTTCAGAGCCACTAGTGGTCCTCTGA 987 49.75 MEQNIVFPKKFTKEDSKRPYEPNAATTVGPRVVRILITDTDATDSSSDEEGGLTRRLRGKRFVSEINIEAGGCRGNRSTPNNRKIIAGEKPLKPSAKIGNGKKFRGVRLRPWGKWAAEIRDSSRGQRVWLGTFDTAEEAAMVYDKAAIHLKGPDAITNFVIPPPRNPEITVPSVSSSSSVAGYESGEECRNLSSPTSVLHFRSSTATDQLSIEEPDLPEPVAELEPPPFMTQECEPPLIEEPLPDYEGETSFSAYSGEYLARDLQYMDDIFKFPNLEEFPMLSEPFYDDDVMMEIPESMWFEDFKTSATGQADDCFQDLFGSEPLVVL 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 251143 252640 - Conep14aG0003400.1 Cone14ag0033 451882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0033 328 FunFam Ethylene-responsive transcription factor 2 102 161 - -
Cone14ag0033 328 CDD AP2 102 159 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone14ag0033 328 MobiDBLite consensus disorder prediction 1 26 - -
Cone14ag0033 328 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 220 IPR050913 -
Cone14ag0033 328 SMART rav1_2 103 166 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone14ag0033 328 SUPERFAMILY DNA-binding domain 103 160 IPR016177 GO:0003677(InterPro)
Cone14ag0033 328 Gene3D AP2/ERF domain 102 161 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone14ag0033 328 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone14ag0033 328 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone14ag0033 328 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone14ag0033 328 Pfam AP2 domain 103 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0033 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0033 Cone-Chr14:251143 Cone8ag0258 Cone-Chr8:1482660 1.96E-46 dispersed
Cone1ag0954 Cone-Chr1:54784274 Cone14ag0033 Cone-Chr14:251143 2.99E-74 wgd
Cone11ag0474 Cone-Chr11:2395452 Cone14ag0033 Cone-Chr14:251143 6.97E-35 wgd
Cone14ag0033 Cone-Chr14:251143 Cone15ag0034 Cone-Chr15:248009 1.49E-201 wgd
Cone14ag0033 Cone-Chr14:251143 Cone18ag1036 Cone-Chr18:7639625 3.39E-37 wgd
Cone14ag0033 Cone-Chr14:251143 Cone5ag0658 Cone-Chr5:2805100 1.32E-76 wgd
Cone14ag0033 Cone-Chr14:251143 Cone6ag0832 Cone-Chr6:4261743 2.07E-41 wgd
Cone14ag0033 Cone-Chr14:251143 Cone9ag0831 Cone-Chr9:4066178 4.87E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g146 . . . . . . . . Cmo08g01215 . Cma06g01543 Cma14g01606 . Car14g01425 . . . . . . . . . . Cla06g00460 Cam06g0491 Cec06g0494 Cco06g0493 Clacu06g0477 Cmu06g0478 Cre06g1251 Cone14ag0033 Cone15ag0034 Cone11ag0474 Cone18ag1036 . Csa06g01779 Chy11g01533 . . . . . . Bpe13g00674 . Bma06g01490 Sed09g0260 . Cmo14g01642 Cma08g01242 . Car08g01117 . . . Bhi12g02034 Tan06g2707 Cmetu11g1571 Lac11g0883 Hepe03g0081 . Lcy12g0762 Cla05g00674 Cam05g0740 Cec05g0747 Cco05g0747 Clacu05g0733 Cmu05g0698 Cre05g0772 Lsi09g01454 Csa03g01492 Chy06g00730 Cme11g02037
Vvi15g322 . . . Bda08g00068 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag0954 Cone5ag0658 Cone14ag0033 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030042 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44694 PF00855 PWWP 3.70E-12 CL0049 Cone TF