Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0043 ATGCATCGTGCTGAATTTTGGTGTGGCATAATGGAGAACATGCTTTATGCTGAAGAGCTTGTGCGAGAATTTCTCGTCTTTAGAGGATTTACAAATACTTTGCAAGCTTTTGAGAGTGAATTGCTCACAGATATTGGAAAAGGGTTCCAAGTAGACAATCTCTTAGATTTGATATTCTCGGTCTATATTCCCAAGTTTCAGGCCGATAAGTTGATTGGTCTGCTGAATTTTTTCAAGCAATGTGTTTCTTCTGCATCTGAGACACAACTTTTCTCTACTCTGTCTAAGTTGGAGGTTTCTATCCTTCGCTATTATCTTGTTCATGCCACTCGATCAGGAAGGACAGACAAAGTTGTGGAGTTTTTTCGAGTGAATGGCAGTGGTCTGTTGCAGAGGGCCGAGGACTGGACACCTTGGTTTGCCATGCCATATATGAAGAACCCGGAGTTGGACCCCGTGCTTCGTATTTATTTCTCGAAAGAATTGTACGAGGCTTTGCATCTCTCCATAAGAAATTTCTTCAGTGAGATCTTCAATGGCACTCGCATTCCTGCACTGCTAAAGATCAGTTCAGAGAAGAACACTGTCAACCGCCTCAAAAAAGACATCAAGCATCTCAATGTTAGGTTGTCACGACTTCAGGCATTGTTGGAGGAAAAAGAGACTAATTTATCCCAGTTAAGGAGTTCATCAAGTGTGCGGCATGAAGACAATGTTCTTTCATACAGAGATGCTGAGGCAGCTTCTACTACTCCGCAGGTGGATGAAAGTCAGAAGGGTCAAAATGGGGACGTAGCTGAACCTGCCGTCACTTCATATTATGAAGTTACAGAGTTCAATGCTGGAAATCCTTCAGGTTCTTCTTTAAATCTTCATGTGGGGGAAAGTTGTGATCCTAGGCATGTTTCTGAAGATGGCCTCTATTCAGATAGTAGCAAGGAGATTCATTCAGAAGAAGAATTTCCTGAAGTGAAAGTAGAATTTCAGGAGACATTCTTGGGGCACACAAGTCAAATAAGTCGGTGCCGTTTTTCAGCATCTGGGAACAATATAGCAAGTGCTTCTCGGGATGGCACAGTCAGGATATGGACATATGACACATCAACCCCAGCATCGAGGAATGCTACAATATACTGTGGAGCAGAGATTACGTCACTTGATTGGGAGTGTAAATCGGACCGCTTGCTTCTCATAGGAACTGCTGATGCGGGCATCAAAGCATGGAATGTTGATGCAAAGAGAGTTGTTTGTGATCTCAGTACAACTGAGGCATTTCCAAGTGTCTTGGACATCAAGTGCAGCCCTGTTGAACCAATTTTTGTCTCTGCAGCAGCATCGAAAGGGCGTGGGTCAAGTTACGTAGATGGTTTGGGGTTTGCCTCGTTAACAGTATGGAACATGAAGATGTGGAAGGCTATGACAGTCCTTCCTCTTGGCACAGATCCGCCAGCAATTACCTCTCTGTGCTTCAATCATAACGGAAAGATTTTAGCTGCTTCTGCAACTGATGGAATGATTCACATGTTTGATATGTCTGCTTGTCAACAAATTACCGGTTGGCCTGCGCATGATTCTGCTGTAAGCTCCATTCTTTTTGGGCCAGATGAGACGAGCATCTTTACCTTGGGATCAGATGGGAAGATATTTGAATGGAGCTTGCACAACCAAGGTCAAGTGCTCTGGTCAAGAAATTGCAGCAGGTTCTGTGATCCAGAGAGCTCAAAACTCCTGAGGAATGAAATGGCTTTAGATGCTAATGGGAGGAGACTCTTGGTAACATCTGATTCAGTGAGAGCATCTATTTATCAGGTTCGCGGTCGAACCAGCGGGTTGAGAACTCTACCACACAGTGCAGCCATAACAACAGTGGATTGGCACCCAACCTTGCCCATTTTCTTGACAGGATCCGCTGACAACTCAGTCCGAGTCACATCTATCTTATAG 1944 44.14 MHRAEFWCGIMENMLYAEELVREFLVFRGFTNTLQAFESELLTDIGKGFQVDNLLDLIFSVYIPKFQADKLIGLLNFFKQCVSSASETQLFSTLSKLEVSILRYYLVHATRSGRTDKVVEFFRVNGSGLLQRAEDWTPWFAMPYMKNPELDPVLRIYFSKELYEALHLSIRNFFSEIFNGTRIPALLKISSEKNTVNRLKKDIKHLNVRLSRLQALLEEKETNLSQLRSSSSVRHEDNVLSYRDAEAASTTPQVDESQKGQNGDVAEPAVTSYYEVTEFNAGNPSGSSLNLHVGESCDPRHVSEDGLYSDSSKEIHSEEEFPEVKVEFQETFLGHTSQISRCRFSASGNNIASASRDGTVRIWTYDTSTPASRNATIYCGAEITSLDWECKSDRLLLIGTADAGIKAWNVDAKRVVCDLSTTEAFPSVLDIKCSPVEPIFVSAAASKGRGSSYVDGLGFASLTVWNMKMWKAMTVLPLGTDPPAITSLCFNHNGKILAASATDGMIHMFDMSACQQITGWPAHDSAVSSILFGPDETSIFTLGSDGKIFEWSLHNQGQVLWSRNCSRFCDPESSKLLRNEMALDANGRRLLVTSDSVRASIYQVRGRTSGLRTLPHSAAITTVDWHPTLPIFLTGSADNSVRVTSIL 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 281868 285548 + Conep14aG0004500.1 Cone14ag0043 451892

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0043 647 MobiDBLite consensus disorder prediction 244 260 - -
Cone14ag0043 647 Coils Coil 189 230 - -
Cone14ag0043 647 PANTHER OS05G0299300 PROTEIN 11 646 - -
Cone14ag0043 647 Gene3D - 451 578 IPR015943 GO:0005515(InterPro)
Cone14ag0043 647 Pfam WD domain, G-beta repeat 612 643 IPR001680 GO:0005515(InterPro)
Cone14ag0043 647 Pfam WD domain, G-beta repeat 329 363 IPR001680 GO:0005515(InterPro)
Cone14ag0043 647 SUPERFAMILY WD40 repeat-like 319 643 IPR036322 GO:0005515(InterPro)
Cone14ag0043 647 ProSiteProfiles Trp-Asp (WD) repeats profile. 520 553 IPR001680 GO:0005515(InterPro)
Cone14ag0043 647 Pfam Anaphase-promoting complex subunit 4 WD40 domain 482 532 IPR024977 -
Cone14ag0043 647 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 613 647 - -
Cone14ag0043 647 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 332 367 - -
Cone14ag0043 647 MobiDBLite consensus disorder prediction 244 264 - -
Cone14ag0043 647 Gene3D - 579 647 IPR015943 GO:0005515(InterPro)
Cone14ag0043 647 SMART WD40_4 513 552 IPR001680 GO:0005515(InterPro)
Cone14ag0043 647 SMART WD40_4 370 409 IPR001680 GO:0005515(InterPro)
Cone14ag0043 647 SMART WD40_4 325 364 IPR001680 GO:0005515(InterPro)
Cone14ag0043 647 SMART WD40_4 469 510 IPR001680 GO:0005515(InterPro)
Cone14ag0043 647 SMART WD40_4 607 645 IPR001680 GO:0005515(InterPro)
Cone14ag0043 647 Gene3D - 187 448 IPR015943 GO:0005515(InterPro)
Cone14ag0043 647 ProSiteProfiles Trp-Asp (WD) repeats profile. 613 647 IPR001680 GO:0005515(InterPro)
Cone14ag0043 647 ProSiteProfiles Trp-Asp (WD) repeats profile. 332 373 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0043 K24760 - - csv:101209643 956.051
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0043 Cone-Chr14:281868 Cone15ag0046 Cone-Chr15:287196 3.78E-189 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g823 . . Bda05g00106 . Bpe03g00248 . Bma10g01272 . Cmo16g00090 . . . . . Sed13g0100 . Cpe14g00070 Bhi01g01430 Tan01g0171 Cmetu06g1598 . Hepe07g0105 Mch10g0107 . . . . . . . . . . Cone14ag0043 . Lsi05g01174 . . Cme06g01058 Blo07g00355 . . . . . . . . . . . . Car16g00076 . . . . . . . . . . Cla05g00934 Cam05g1021 Cec05g1025 Cco05g1021 Clacu05g1010 Cmu05g0963 Cre05g1044 . Csa03g02177 Chy06g01279 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010151 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32