Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0044 ATGGAGCAGAAGCACATTTTGCTGTCTGCTTTAGGGGTAGGGGTTGGAGTTGGTGTTGGGCTTGGGTTGAGTTCAGGGCAAGGTGTTGGTAAATATTGGGTGAAAGGCCAAAACTTTGGTGATGACATTTCAGGGGAGGTGATTGAGAAGGAGCTCATTAAGCTTCTCTTTGATGGCAAAGAAAGTAGCGTTACATTTGATGAGTTTCCTTATTACCTAAGTGAAAGGACGCAGGTATTATTGACGAGCGCTGCTTGTGTTCATTTAAAACAGCATGATATTTCCAAGCACACCCGTAATCTTTCACCCGCAAGTAGAGCTATTCTGCTTTCCGGACCTTCCGAAATTTGCCAACAAATGCTCACCACGGCTTTATCACATCAGTTTGATGCAAAGTTGCTGCTGCTAGATGTTTCGGACTTTTCTCTGAAGATGCAGAGCAAATATGGTTGTATCAAAAAGGAACCTTCGTTCAAAAGGTCCATCTCGGAGGTGACATTGGACCGGATGTCAAGTTTTCTTGGTTCTTTTTCAATACTTCCTTCAAGTGATAATAATAAAGAGTATTCTCCTACAGTTACCTTACGCCGACAAGGAAGGTCCATGGAAATCAAATCAAGAAGCACAGAAGGTTCAAGTAATGCTCCAAAACTCTGTCGAAATACCTCAGCTGCATCCGACATGAGTAGCATCTCATCCAAATATTCCCCCACACATCAAGCTCCCCTTAAGCACACAAGCAGCTGGTGTTTTGATGAGAAACTTTTTCTACAGTCCCTCTACAAGGTCCTAATGTTAAAATCCAACACCGGGTCCATTATTTTGTACTTGAGGGATGTGGAGAAATTTCTTTTCCAGTCACAAAGATTATACAATCTGTTCAGTAAATTTCTGAACAAACTCTCAGGTTCAGTGTTAGTACTTGGGTCTCGACTAGTTGACCCAGCAGATGATTGCAAAGAGGTGGACGAAAAAGTGGTCCATTTGTTCCCTTACAATATCGAGATCACCCCGCCCAATGATGAGGCCAATCTAGTCAGCTGGAAAGCCCAACTAGAAGAGGACATGAAGGTGATTCAATTCAAAGATAACAAAAATCACATTGCTCAAGTACTTGCTGCAAATGATTTAGAATGTGACGATCTAGGTTCGATTTGCCTTGCGGACACTGTGGTTCTTGGTAATTACATTGAAGAAATTGTCGTATCTGCAATTTCCTATCATTTAATCAATAACAAGCAGCCTGAATACAGAAATGGAAAGCTTCTTATATCTTCCAAGAGTTTGTCGCATGGATTGAGCATATTCCAGGAAGGAAATTTCGAAGGAAAAGACAGTCTAAAGCTGGAAGGAAATACAGAGTCTTCTCGGGAAACTGTTGCAAACAAAAATGAGGCAGAAAAATCCGCTCCTACAACAAAGAAGGAAGGCGAGAATGGACCTACACAAAAAGCACCTGATGTTCCTCCGGACAATGAATTTGAGAAACGCATAAGGCCAGAGGTAATCCCTGCAAATGAGATAGGAGTGACATTTTCAGACATAGGTGCCATGGAAGAAATCAAAGAATCGCTTCAAGAACTTGTGATGCTTCCTCTTAGAAGACCTGACCTCTTCAAAGGCGGGCTTCTTAAGCCCTGCAGGGGTATATTGCTTTTCGGGCCACCTGGCACTGGAAAGACAATGTTGGCTAAGGCCATTGCAAATGAGGCCGGAGCAAGTTTCATTAACGTTTCAATGTCTACTATCACTTCCAAGTGGTTTGGAGAAGATGAGAAGAATGTACGTGCTCTTTTCACTCTTGCCACTAAGGTCTCTCCTACCATTATTTTCGTGGATGAGGTTGATAGCATGCTGGGGCAACGCACTAGGGTTGGAGAGCACGAGGCTATGAGGAAGATAAAGAATGAGTTTATGAGTCATTGGGATGGGCTTTTGACTAAAACCGGAGAGAGGATTCTAGTTCTTGCTGCAACTAATAGGCCGTTTGATCTTGATGAGGCGATCATTAGGCGGTTTGAGAGAAGAATTATGGTTGGTCTTCCTTCAGTGGAGAGCAGGGAAATGATCCTGAAAACTCTTTTGGCAAAAGAGAAGGTTGAGAATATGGATTTCAAGGAGCTTGCAACTATGACAGAAGGATATAGTGGAAGTGATCTGAAGAATTTGTGCACAACGGCTGCTTATCGACCTGTCCGAGAGCTGTTACAACAGGAGACATCAAAGGATAAGGAAAAGAAACAGAATGAGAAAAAAGGGAAGAAATTGGAGGATAGTTTAGAAGATGGTTCAGAAACAAAAGAGGAAGAAGATAAAGATGACCAAGTAATCAATTTAAGGCCCTTGAATATGGAAGATATGAAGCAAGCAAAATATCAGGTGGCTGCAAGTTTTGCTGCAGAGGGATCGGTAATGAGCGAGCTGAAGCAGTGGAACGATTTGTATGGAGAGGGGGGTTCAAGAAAAAAGCAACAGCTAACCTACTTCCTTTAG 2493 42.48 MEQKHILLSALGVGVGVGVGLGLSSGQGVGKYWVKGQNFGDDISGEVIEKELIKLLFDGKESSVTFDEFPYYLSERTQVLLTSAACVHLKQHDISKHTRNLSPASRAILLSGPSEICQQMLTTALSHQFDAKLLLLDVSDFSLKMQSKYGCIKKEPSFKRSISEVTLDRMSSFLGSFSILPSSDNNKEYSPTVTLRRQGRSMEIKSRSTEGSSNAPKLCRNTSAASDMSSISSKYSPTHQAPLKHTSSWCFDEKLFLQSLYKVLMLKSNTGSIILYLRDVEKFLFQSQRLYNLFSKFLNKLSGSVLVLGSRLVDPADDCKEVDEKVVHLFPYNIEITPPNDEANLVSWKAQLEEDMKVIQFKDNKNHIAQVLAANDLECDDLGSICLADTVVLGNYIEEIVVSAISYHLINNKQPEYRNGKLLISSKSLSHGLSIFQEGNFEGKDSLKLEGNTESSRETVANKNEAEKSAPTTKKEGENGPTQKAPDVPPDNEFEKRIRPEVIPANEIGVTFSDIGAMEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLATKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTKTGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESREMILKTLLAKEKVENMDFKELATMTEGYSGSDLKNLCTTAAYRPVRELLQQETSKDKEKKQNEKKGKKLEDSLEDGSETKEEEDKDDQVINLRPLNMEDMKQAKYQVAASFAAEGSVMSELKQWNDLYGEGGSRKKQQLTYFL 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 290164 295120 + Conep14aG0004600.1 Cone14ag0044 451893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0044 830 Gene3D - 682 758 - -
Cone14ag0044 830 MobiDBLite consensus disorder prediction 446 495 - -
Cone14ag0044 830 MobiDBLite consensus disorder prediction 188 219 - -
Cone14ag0044 830 ProSitePatterns AAA-protein family signature. 653 672 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone14ag0044 830 Gene3D - 509 681 IPR027417 -
Cone14ag0044 830 MobiDBLite consensus disorder prediction 460 474 - -
Cone14ag0044 830 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 509 684 - -
Cone14ag0044 830 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 39 829 IPR051701 GO:0005741(PANTHER)
Cone14ag0044 830 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 510 750 IPR027417 -
Cone14ag0044 830 Pfam ATPase family associated with various cellular activities (AAA) 550 680 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone14ag0044 830 MobiDBLite consensus disorder prediction 735 778 - -
Cone14ag0044 830 SMART AAA_5 546 683 IPR003593 GO:0016887(InterPro)
Cone14ag0044 830 MobiDBLite consensus disorder prediction 736 762 - -
Cone14ag0044 830 Pfam AAA+ lid domain 704 745 IPR041569 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0044 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0044 Cone-Chr14:290164 Cone16ag0024 Cone-Chr16:161078 7.11E-171 dispersed
Cone14ag0044 Cone-Chr14:290164 Cone15ag0049 Cone-Chr15:307190 0 wgd
Cone14ag0044 Cone-Chr14:290164 Cone5ag0903 Cone-Chr5:3871261 0 wgd
Cone14ag0044 Cone-Chr14:290164 Cone5ag0648 Cone-Chr5:2764432 1.05E-31 wgd
Cone14ag0044 Cone-Chr14:290164 Cone6ag0820 Cone-Chr6:4175897 0 wgd
Cone14ag0044 Cone-Chr14:290164 Cone9ag0819 Cone-Chr9:3950168 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g811 . . . . . Bpe07g00999 . Bma14g02021 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0044 . . . . . . . Bda06g00769 Bda15g00666 . . . Bma12g01184 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75