Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0052 ATGGCAGCTTCGGAAGAGAATAGCGCTTTGTTCCCAATTTTCATCTTGACTATAATGGCACTGCCTTTAGTGCCTTATACAATAATGAAGCTATGTCGTTCTTTCACAAAGAAAGAAAAAAGCATACACTGCCGGTGCAGTGACTGCTCTCATTCAGGAAAATACCGTGAATCAATATTCAAGCGGATATCAAATTTCTCAACCTATAGCAACTTGACATTAGTTCTCCTCTGGATTGTGATGATTGTCTTGGTGTATTACATTAAGAGTATGAGCCATGAGATCCAAGTTTTCGATCCCTTTAGTATTCTAGGATTGGAAGCAGGAGCATCGGATGGTGATGTTAAGAAGGCATATCGGAGACTTTCTATTCTATACCATCCGGATAAAAATCCAGATCCAGAGGCCAACAAATATTTTGTGGAGTTTATATCTAAGGCCTATCAGGCTCTGACTGATCCAGTATCCCGTGAGAATTATGAAAAATATGGTCACCCAGATGGTAGGCAGGGGTTTCAAATGGGTATAGCTCTACCTCAGTTCCTGCTGAATATAGATGGGGCTTCGGGCGGAATACTCTTATTGTGGATTGTTGGTCTTTGTATTCTCTTGCCTTTGATAGTAGCTGTTATATATCTTTCAAGGTCTTCGAAATATACCGGGAACAATGTCATGCATCAAACTATGTCCACTTATTATTACCTCATGAAGCCTTCTTTGGCACCAAGCAAAGTTATGGATGTCTTCATAAAGGCTGCCGAATATGTAGAAATCCCAGTTCGTAGAACTGACACAGAACCGCTTCAAAAGCTTTTCATGCTAGTTAGAAGTGAGTTAAATCTCGACCTTAAGAACATCAAGCAAGAGCAAGCAAAGTTTTGGAAGCAACATCCGGCACTTGTCAAGACAGAATTGCTTATCCAAGCTCAGTTGACTCGCCAGTCAGCAAACTTGCCCCCTGCTTTGCAAGGTGACTTCAAACGTGTGCTAGAACTTGCTCCTCGGCTTCTTGAAGAATTAATGAAGATGGCACTTATTCCGCGGAATGCTCAAGGTCAAGGATGGCTAAGGCCTGCAACTGGGGTCATTGAACTCTCTCAATGCGTGATTCAGGCTGTTCCTCTCAATGCAAGAAAGGCAACTGGGGGATCCTCCGAAGGCATTGCACCCTTTCTGCAACTGCCCCATTTCAGTGAGGCTGTTGTCAAGAAGATAGCTCGCAAGAAGGTAAGAACGTTCGAGGAGCTTCGAGACATGACTCAGGAAGATCGTGCTGAGCTACTTACACAAGTAGCAGGGTTCTCACCTACTGAAGTTCAAGATATTGAAGTGGTACTAGAAATGATGCCATCGATAACAACTGAGGTGACTTGTGAGACAGAAGGAGAAGAAGGGATGCAAGAAGGAGACATAGTCACCGTTCATACTTGGGTTTCACTTGAACGCAAAAACGGCTTGATCGGTGCCCTCCCTCATTGCCCCTACTACCCGTTTCACAAGGAAGAAAATTTCTACTTTCTACTTGCAGACCCTGTCTTGAACAATGTCTGGTTTTCTCAGAAGGTTAGTTACATGGATGAAACAGGAGCTATCACAGCAGCTTCTAAAACGATCGAGGAGAAAATGGAAGGATCTGGAGCAACTGTAAAAGAGACAAGTGCTGCCATTAGAGAAGCAGTTGAGAAAGTAAAAACAGGATCAAGATTGGTAATGGGCAAATTCCAGGCTCCAGCTGAGGGAAACTACAATTTGACATGCTATTGCTTGTGTGATTCCTGGATTGGCTGTGATAAAAAGTCAAGCTTGAAGCTGAAGATATTAAAACGAACCCGGGCTGGTACTAGGGGCGGCCTTGTAGCAGAAGAGGGACCACTTATGGAGGATGGAGTTGAAGAGGAAGAGGAGAATGAAGAAGAAGAAGAATATGACGACTATGAGAGTGAATATAGTGAAGACGAAGCTGATGAGCAAGATTCTAAAAAGAAGGGCCCAGTTGCCAATGGCACTGCACACAAACAAGGATCAGATTCAGAATCCTCCACTTCAGATGAGGACTGA 2058 43.49 MAASEENSALFPIFILTIMALPLVPYTIMKLCRSFTKKEKSIHCRCSDCSHSGKYRESIFKRISNFSTYSNLTLVLLWIVMIVLVYYIKSMSHEIQVFDPFSILGLEAGASDGDVKKAYRRLSILYHPDKNPDPEANKYFVEFISKAYQALTDPVSRENYEKYGHPDGRQGFQMGIALPQFLLNIDGASGGILLLWIVGLCILLPLIVAVIYLSRSSKYTGNNVMHQTMSTYYYLMKPSLAPSKVMDVFIKAAEYVEIPVRRTDTEPLQKLFMLVRSELNLDLKNIKQEQAKFWKQHPALVKTELLIQAQLTRQSANLPPALQGDFKRVLELAPRLLEELMKMALIPRNAQGQGWLRPATGVIELSQCVIQAVPLNARKATGGSSEGIAPFLQLPHFSEAVVKKIARKKVRTFEELRDMTQEDRAELLTQVAGFSPTEVQDIEVVLEMMPSITTEVTCETEGEEGMQEGDIVTVHTWVSLERKNGLIGALPHCPYYPFHKEENFYFLLADPVLNNVWFSQKVSYMDETGAITAASKTIEEKMEGSGATVKETSAAIREAVEKVKTGSRLVMGKFQAPAEGNYNLTCYCLCDSWIGCDKKSSLKLKILKRTRAGTRGGLVAEEGPLMEDGVEEEEENEEEEEYDDYESEYSEDEADEQDSKKKGPVANGTAHKQGSDSESSTSDED 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 318404 322345 + Conep14aG0005400.1 Cone14ag0052 451901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0052 685 SMART Sec63_2 209 604 IPR004179 -
Cone14ag0052 685 Gene3D C2 domain 450 613 IPR035892 -
Cone14ag0052 685 FunFam DnaJ protein ERDJ2A 225 373 - -
Cone14ag0052 685 SUPERFAMILY E set domains 456 608 IPR014756 -
Cone14ag0052 685 Pfam Sec63 Brl domain 223 602 IPR004179 -
Cone14ag0052 685 MobiDBLite consensus disorder prediction 625 653 - -
Cone14ag0052 685 SUPERFAMILY Sec63 N-terminal domain-like 244 450 - -
Cone14ag0052 685 ProSiteProfiles dnaJ domain profile. 99 164 IPR001623 -
Cone14ag0052 685 CDD DnaJ 99 153 IPR001623 -
Cone14ag0052 685 Gene3D DnaJ domain 95 173 IPR036869 -
Cone14ag0052 685 Pfam DnaJ domain 99 161 IPR001623 -
Cone14ag0052 685 Coils Coil 635 655 - -
Cone14ag0052 685 SMART dnaj_3 98 156 IPR001623 -
Cone14ag0052 685 PRINTS DnaJ domain signature 156 175 IPR001623 -
Cone14ag0052 685 PRINTS DnaJ domain signature 101 119 IPR001623 -
Cone14ag0052 685 PRINTS DnaJ domain signature 136 156 IPR001623 -
Cone14ag0052 685 PRINTS DnaJ domain signature 119 134 IPR001623 -
Cone14ag0052 685 MobiDBLite consensus disorder prediction 618 685 - -
Cone14ag0052 685 FunFam DnaJ protein ERDJ2A 98 180 - -
Cone14ag0052 685 SUPERFAMILY Chaperone J-domain 96 191 IPR036869 -
Cone14ag0052 685 Gene3D - 225 373 - -
Cone14ag0052 685 PANTHER SEC63 DOMAIN-CONTAINING 5 656 - GO:0003723(PANTHER)|GO:0006614(PANTHER)|GO:0006620(PANTHER)|GO:0008320(PANTHER)|GO:0031207(PANTHER)
Cone14ag0052 685 Gene3D - 389 448 - -
Cone14ag0052 685 FunFam DnaJ protein ERDJ2A 389 448 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0052 K09540 - - csv:101209193 1077.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0052 Cone-Chr14:318404 Cone6ag1072 Cone-Chr6:6472305 1.77E-13 dispersed
Cone15ag0058 Cone-Chr15:345245 Cone14ag0052 Cone-Chr14:318404 5.47E-164 transposed
Cone14ag0052 Cone-Chr14:318404 Cone15ag0057 Cone-Chr15:342552 1.25E-248 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g785 . . . Bda07g01902 Bpe03g00158 . . Bma14g02040 Cmo16g00097 Cmo18g01308 . . . . . . Cpe14g00076 . . . . . . . . . . . . . . . . Cone14ag0052 Cone15ag0058 Lsi05g01183 . . Cme06g01046 . Blo09g00057 . . . . . . . . . Cma16g00092 Cma18g01277 Car16g00082 Car18g01191 Cpe09g00060 . . . . . . . . Cla05g00924 Cam05g1012 Cec05g1016 Cco05g1012 Clacu05g1001 Cmu05g0954 Cre05g1035 . Csa03g01758 Chy06g00986 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005404 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 2 1 2 1 1 40