Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0073 ATGTGGTTGTTTAGCAGAAGAGGCCCATCTAGGTTTTCTGCTTCATCCACTGCTGAAGAAGTTACAGAAGGGAGTGACGGAATTGGTCTCACAGCCATTGTTACAGGGGCATCAAGTGGCATTGGCATGGAAACTGCTGGGGTTCTTGCGTTGCGTGGAGTTCATCTCGTTATGGGTGTAAGAAATATTACAACCGGAAAAGAGGTCCGAAAAGCAATAGTCAATGAAGTACCAACTGCAATTGATACCATGGAGTTGGACTTAAGCTCAATGGCATCAGCAAGGAAGTTTGGTCAAGATTACAATTTTTCGAATCTTCCATTGAACATCCTCATTAACAACGCCGGAATCATGGCAACTCCATTGATGCTTTCCAAAGACAACATAGAGCTACAGTTTGCAACAAACCATGTGGGTCATTTTCTTTTATTAGAGGCCATCAGAAAGACAGCTTTTGAAAGCAAAAAGGAAGGAAGGATTGTCAATGTCTCATCAAGGCGGCATCAATTCTCTTACTGCGAGAGTATCCGTTATAACAGCCTATCTGCATATGGTCAGTCAAAGCTTGCTAATGTTTTGCATGCCGTTGAACTTTCAAGACGCCAAAAGGTCTCTAGCCTAATTGATAAATATGTACTAAAGAATGTTCAGCAGGGTGCAGCAACTACATGCTATGTGGCACTGCATCCAGAAATCGGAGGGATTAGCGGCCGATATTTTGCTGATAGTAACATAGCTGAAGCAAGTTCCCAAGCTAATGATTCTGAGTTAGCACGAAAACTCGGGGATTTTAGTTTGGATTTGATTAATAGAAATAGTTCCAAGAGCATTTGA 834 42.09 MWLFSRRGPSRFSASSTAEEVTEGSDGIGLTAIVTGASSGIGMETAGVLALRGVHLVMGVRNITTGKEVRKAIVNEVPTAIDTMELDLSSMASARKFGQDYNFSNLPLNILINNAGIMATPLMLSKDNIELQFATNHVGHFLLLEAIRKTAFESKKEGRIVNVSSRRHQFSYCESIRYNSLSAYGQSKLANVLHAVELSRRQKVSSLIDKYVLKNVQQGAATTCYVALHPEIGGISGRYFADSNIAEASSQANDSELARKLGDFSLDLINRNSSKSI 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 394425 395927 - Conep14aG0007600.1 Cone14ag0073 451922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0073 277 Gene3D - 23 273 - -
Cone14ag0073 277 PANTHER VERY-LONG-CHAIN 3-OXOACYL-COA REDUCTASE-RELATED 1 265 - -
Cone14ag0073 277 Pfam short chain dehydrogenase 31 190 IPR002347 -
Cone14ag0073 277 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 245 IPR036291 -
Cone14ag0073 277 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Cone14ag0073 277 PRINTS Glucose/ribitol dehydrogenase family signature 106 117 IPR002347 -
Cone14ag0073 277 PRINTS Glucose/ribitol dehydrogenase family signature 152 168 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0073 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0073 Cone-Chr14:394425 Cone8ag0615 Cone-Chr8:5927691 8.69E-55 dispersed
Cone1ag1173 Cone-Chr1:55779073 Cone14ag0073 Cone-Chr14:394425 9.07E-117 wgd
Cone14ag0073 Cone-Chr14:394425 Cone15ag0076 Cone-Chr15:418365 1.19E-148 wgd
Cone14ag0073 Cone-Chr14:394425 Cone5ag0880 Cone-Chr5:3771236 9.06E-87 wgd
Cone14ag0073 Cone-Chr14:394425 Cone9ag0789 Cone-Chr9:3786302 7.68E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1173 Cone5ag0880 Cone14ag0073 Cone15ag0076 . . Chy09g01373 . . . . . . . . Bma12g01115 . . . . . . . . . Bhi12g00030 . . Lac11g0045 . . Lcy12g0042 . . . . . . . Lsi09g00093 . . Cme09g01920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126