Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0088 ATGAGATCTTTAACTCTATTGGGTTCAACGGTAGTTCGAAAAGATTCGTGTTTTTTCATCATTTGTCGAAAATTATGCTATGGAAGTAGTGATGATAATGGTAAATTTGACGATGGGTATGAAGTGATTGACGAAACGATAAAGAGGATGTGGAAAGATCGAGATGATGATGAAAAACGAGATGGTGCAGAAAACTTTTCAGCAAGGCGAAATTTCTTTGAAAATGTTTGGGGTGATGCTGAGAGGGTTTTTCAAATTCTCAGACAAGATGGTCCTGGATTCGACACCAAATTGGCTCTACATGATTTACAAATTAGGGTTTCAGGTCTTCTTGTGCGGGAAGTACTCTCCGGAATTTTGAGAGACATAAATCATTCGAATAAAACCCGTTGTGCTAAATTGGGATATAAGTTCTTTGTATGGTCCAGAGAGCAGGAACATTACAGCCATACTGTAAACTCATATCATTTAATAATGAACATTTTTGCACAATGTGAAGAGTTTAAAGCGATGTGGAGGTTATTAGAGGAGATGACTGAGAAAGGATATCCAACCACTGCAAGGACTTTCAACATACTGATATGTACTTGTGGTGAAGCGGGCTTAGCTAAGAGAGTGGTGGAAAGGTTTATAAAATCGAGAACATTCAATTATAGGCCGTTTAAACACTCTTATAATGCAATCTTGCATTCCCTTCTTACTATAAACCAGTACAAATTGATTGAATGGGTATATCAGCAAATGCTAGTTGATGGCCACTATCCGGATACTCTAACATACAATGTACTCATGTGTGCAAAGTATAAGCTCGGGAAGTTGGATCAGTTTCATAGACTACTTGATGAAATGGGTAGAAATGGATTTTCTCCAGATTGTCATACATATAATATTCTTCTCCATGTTCTAGGTAAAGGTGACAAGCCTCTAGCAGCTCTTAACCTTTTAAACCATATGAAGGAAGTGGGTTTTGATCCTACTGTTCTGCACTTCACTACATTGATAGATGGGCTTAGCCGGGCCGGAAATTTAGATGCATGCAAATATTTCTTCAACGAAATGATCAAAAGGGGTCATTTTCCAGACGTTGTGTGTTACACAGTAATGATAACAGGGTATATTGTGGCAGGGGAGCTTGAAATGGCTCAAGAATTGTTTCGTGAAATGGTAATAAAGGGACAGCTTCCAAATGTATTTACATACAATTCTATGATTAGAGGGTTCTGTACAGCTGGAAAGTTTGAGGAGGCTTGCTCTTTGCTAATCGATATGGAGTCTACAGGGTGTAATCCGAATTTCCTTGTGTATAGCAATCTCGTCAATTATTTAAGAAAAGCTGGAAAGCTTTCTGAAGCTCAAGAGGTAATGAGACATATGGCGGAGAAGGGTCAGTATGCTCATCTTGCTTCCAAGTTCAAGGGATATAGAAGATGGTAG 1434 38.49 MRSLTLLGSTVVRKDSCFFIICRKLCYGSSDDNGKFDDGYEVIDETIKRMWKDRDDDEKRDGAENFSARRNFFENVWGDAERVFQILRQDGPGFDTKLALHDLQIRVSGLLVREVLSGILRDINHSNKTRCAKLGYKFFVWSREQEHYSHTVNSYHLIMNIFAQCEEFKAMWRLLEEMTEKGYPTTARTFNILICTCGEAGLAKRVVERFIKSRTFNYRPFKHSYNAILHSLLTINQYKLIEWVYQQMLVDGHYPDTLTYNVLMCAKYKLGKLDQFHRLLDEMGRNGFSPDCHTYNILLHVLGKGDKPLAALNLLNHMKEVGFDPTVLHFTTLIDGLSRAGNLDACKYFFNEMIKRGHFPDVVCYTVMITGYIVAGELEMAQELFREMVIKGQLPNVFTYNSMIRGFCTAGKFEEACSLLIDMESTGCNPNFLVYSNLVNYLRKAGKLSEAQEVMRHMAEKGQYAHLASKFKGYRRW 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 440845 443001 - Conep14aG0009100.1 Cone14ag0088 451937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0088 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Cone14ag0088 477 Pfam PPR repeat family 255 303 IPR002885 -
Cone14ag0088 477 Pfam PPR repeat family 360 408 IPR002885 -
Cone14ag0088 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Cone14ag0088 477 NCBIfam pentatricopeptide repeat 398 431 IPR002885 -
Cone14ag0088 477 NCBIfam pentatricopeptide repeat 293 326 IPR002885 -
Cone14ag0088 477 NCBIfam pentatricopeptide repeat 330 362 IPR002885 -
Cone14ag0088 477 NCBIfam pentatricopeptide repeat 363 396 IPR002885 -
Cone14ag0088 477 NCBIfam pentatricopeptide repeat 259 292 IPR002885 -
Cone14ag0088 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Cone14ag0088 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Cone14ag0088 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Cone14ag0088 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Cone14ag0088 477 Pfam PPR repeat 322 353 IPR002885 -
Cone14ag0088 477 Gene3D Tetratricopeptide repeat domain 195 307 IPR011990 GO:0005515(InterPro)
Cone14ag0088 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Cone14ag0088 477 Gene3D Tetratricopeptide repeat domain 390 463 IPR011990 GO:0005515(InterPro)
Cone14ag0088 477 Gene3D Tetratricopeptide repeat domain 313 389 IPR011990 GO:0005515(InterPro)
Cone14ag0088 477 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 189 464 IPR051240 GO:0003729(PANTHER)
Cone14ag0088 477 Pfam PPR repeat 154 182 IPR002885 -
Cone14ag0088 477 Pfam PPR repeat 434 462 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0088 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0088 Cone-Chr14:440845 Cone15ag0092 Cone-Chr15:470825 2.51E-187 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g666 . . Bda05g00073 . Bpe03g00288 . Bma10g01222 . Cmo16g00134 Cmo18g01269 . . . . Sed07g1105 . Cpe14g00109 Bhi01g01321 Tan01g0253 Cmetu06g1773 . Hepe07g0160 Mch10g0155 . . . . . . . . . . Cone14ag0088 Cone15ag0092 Lsi05g01227 . . . Blo07g00412 . . . . . . . . . . . Cma18g01246 Car16g00114 Car18g01152 Cpe09g00092 . . . . . . . . Cla05g00880 Cam05g0968 Cec05g0972 Cco05g0972 . Cmu05g0912 Cre05g0996 . Csa03g01710 Chy06g00946 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006768 1 1 1 1 1 1 2 1 1 1 1 0 2 0 1 2 1 2 2 1 1 1 1 2 2 2 1 1 1 1 36