Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0113 ATGAATTTGTCGGACGAAGAGGTTTTGTTAGCCTCTAGAAACCCGAAAAAGAGAGCGGGAAGGAAGAAGTTCAAGGAGACACGCCACCCCGTGTACAGAGGAGTGAGGAGGAGGAATTCCGGTAAGTGGGTTTGTGAAGTTAGAGAACCCAATAAGAAGACCAGGATTTGGCTCGGGACATTCCCGACTGCTGATATGGCAGCCCGGGCACATGACGTGGCCGCGATAGCATTGAGGGGTCAGTCGGCTTGTTTGAATTTTGCTGACTCGACTTGGCGGTTACCGGTGCCGGAATCTATGGATGCGAAGGATATTCAGAAGGCAGCGGTGAAGGCTGCGGAGGAGTTCCGCCCGCTTGCATCAGAAGGGGTGCCCGGAGATAATCTGGGGAGCGATTTTCCAGTGGCTGCAGGGGCGGGGGAAGAAGTGTTTTACATGGATGAGGACGTGGTTTTCGGGCTGCCCGGGTTGCTGGTGAATATGGCGGAAGGGATGCTTTTGCCTCCGCCTGAGTGTGTTGTAGATGGCTCCGGCGGCGACGACGACGTGGAACTCAAGGCTGATATCTCATTGTGGAGTTATTCAGTTTAA 591 53.98 MNLSDEEVLLASRNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKTRIWLGTFPTADMAARAHDVAAIALRGQSACLNFADSTWRLPVPESMDAKDIQKAAVKAAEEFRPLASEGVPGDNLGSDFPVAAGAGEEVFYMDEDVVFGLPGLLVNMAEGMLLPPPECVVDGSGGDDDVELKADISLWSYSV 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 525640 526230 + Conep14aG0011600.1 Cone14ag0113 451962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0113 196 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone14ag0113 196 CDD AP2 32 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone14ag0113 196 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 2 194 IPR045277 GO:0003700(InterPro)
Cone14ag0113 196 Pfam AP2 domain 30 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone14ag0113 196 SUPERFAMILY DNA-binding domain 31 90 IPR016177 GO:0003677(InterPro)
Cone14ag0113 196 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone14ag0113 196 SMART rav1_2 31 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone14ag0113 196 FunFam Ethylene-responsive transcription factor 2 30 89 - -
Cone14ag0113 196 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone14ag0113 196 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone14ag0113 196 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0113 Cone-Chr14:525640 Cone5ag0848 Cone-Chr5:3637109 3.42E-90 dispersed
Cone1ag1140 Cone-Chr1:55645962 Cone14ag0113 Cone-Chr14:525640 8.57E-35 wgd
Cone14ag0113 Cone-Chr14:525640 Cone15ag0118 Cone-Chr15:569337 3.07E-124 wgd
Cone14ag0113 Cone-Chr14:525640 Cone5ag0847 Cone-Chr5:3631525 3.12E-38 wgd
Cone14ag0113 Cone-Chr14:525640 Cone6ag0745 Cone-Chr6:3780101 4.45E-80 wgd
Cone14ag0113 Cone-Chr14:525640 Cone9ag0749 Cone-Chr9:3572793 4.74E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44700 PF03931 Skp1_POZ 3.10E-05 CL0033 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0113 - - - 0.0