Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone14ag0113 | ATGAATTTGTCGGACGAAGAGGTTTTGTTAGCCTCTAGAAACCCGAAAAAGAGAGCGGGAAGGAAGAAGTTCAAGGAGACACGCCACCCCGTGTACAGAGGAGTGAGGAGGAGGAATTCCGGTAAGTGGGTTTGTGAAGTTAGAGAACCCAATAAGAAGACCAGGATTTGGCTCGGGACATTCCCGACTGCTGATATGGCAGCCCGGGCACATGACGTGGCCGCGATAGCATTGAGGGGTCAGTCGGCTTGTTTGAATTTTGCTGACTCGACTTGGCGGTTACCGGTGCCGGAATCTATGGATGCGAAGGATATTCAGAAGGCAGCGGTGAAGGCTGCGGAGGAGTTCCGCCCGCTTGCATCAGAAGGGGTGCCCGGAGATAATCTGGGGAGCGATTTTCCAGTGGCTGCAGGGGCGGGGGAAGAAGTGTTTTACATGGATGAGGACGTGGTTTTCGGGCTGCCCGGGTTGCTGGTGAATATGGCGGAAGGGATGCTTTTGCCTCCGCCTGAGTGTGTTGTAGATGGCTCCGGCGGCGACGACGACGTGGAACTCAAGGCTGATATCTCATTGTGGAGTTATTCAGTTTAA | 591 | 53.98 | MNLSDEEVLLASRNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKTRIWLGTFPTADMAARAHDVAAIALRGQSACLNFADSTWRLPVPESMDAKDIQKAAVKAAEEFRPLASEGVPGDNLGSDFPVAAGAGEEVFYMDEDVVFGLPGLLVNMAEGMLLPPPECVVDGSGGDDDVELKADISLWSYSV | 196 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 525640 | 526230 | + | Conep14aG0011600.1 | Cone14ag0113 | 451962 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone14ag0113 | 196 | Gene3D | AP2/ERF domain | 31 | 89 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone14ag0113 | 196 | CDD | AP2 | 32 | 90 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone14ag0113 | 196 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 2 | 194 | IPR045277 | GO:0003700(InterPro) | |
Cone14ag0113 | 196 | Pfam | AP2 domain | 30 | 80 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone14ag0113 | 196 | SUPERFAMILY | DNA-binding domain | 31 | 90 | IPR016177 | GO:0003677(InterPro) | |
Cone14ag0113 | 196 | ProSiteProfiles | AP2/ERF domain profile. | 31 | 88 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone14ag0113 | 196 | SMART | rav1_2 | 31 | 94 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone14ag0113 | 196 | FunFam | Ethylene-responsive transcription factor 2 | 30 | 89 | - | - | |
Cone14ag0113 | 196 | PRINTS | Ethylene responsive element binding protein signature | 54 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone14ag0113 | 196 | PRINTS | Ethylene responsive element binding protein signature | 32 | 43 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone14ag0113 | 196 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone14ag0113 | Cone-Chr14:525640 | Cone5ag0848 | Cone-Chr5:3637109 | 3.42E-90 | dispersed | |
Cone1ag1140 | Cone-Chr1:55645962 | Cone14ag0113 | Cone-Chr14:525640 | 8.57E-35 | wgd | |
Cone14ag0113 | Cone-Chr14:525640 | Cone15ag0118 | Cone-Chr15:569337 | 3.07E-124 | wgd | |
Cone14ag0113 | Cone-Chr14:525640 | Cone5ag0847 | Cone-Chr5:3631525 | 3.12E-38 | wgd | |
Cone14ag0113 | Cone-Chr14:525640 | Cone6ag0745 | Cone-Chr6:3780101 | 4.45E-80 | wgd | |
Cone14ag0113 | Cone-Chr14:525640 | Cone9ag0749 | Cone-Chr9:3572793 | 4.74E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44700 | PF03931 | Skp1_POZ | 3.10E-05 | CL0033 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone14ag0113 | - | - | - | 0.0 |