Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0123 ATGGTGAGAGGGAAAATCGAGATGAAGCGAATCGAAAATGAAACGAGCAGGCAAGTAACGTTCTCCAAGCGTAGAAGTGGACTACTGAAGAAAGCATTCGAGTTGTCTGTGCTCTGTGATGCTGAAGTTGCTGTCATCATTTTTTCCCAGAAAGGGAGGCTTTATCAGTTTTCAAGCTCTGAGATGCAAAACACGATCGAAAGATACCACAAGTGTGGAAAAGATGTGCAAACCAACAGGTTGGACATGGAACAGTATATACAGCACTTGAAGCTTGAGAGCACAAGTCTAACAAAGAAGATTGAGCTCCTTCAAGTTTCTCAACGGAAATTTTTGGGACATCAGTCGTGTTCATCATCCATTGAGGAACTCCAAGAGTTAAGTGTCCAATTGGAGCAAAGTTTATGCCGCATTCGAGCCAGAAAGGCTCAGTTATTCATGGAACAATTGGAGCAACTAAAAGCAAAGGAGAGACTGCTTTTGGAGGAGAATGCAAAGTTAATTTCTAAGGTTAAGCCATGGACGATTGTGCGACAAGCTGGAGGGGCACAGTTCTTTGAGAAGACTAACAATGGCAGCCAAAGTAGAGAGTCCACTAAAAATTCAGATTATGTAGAGACTGACTTGGTCATTGGTTTGCGCTGCTCCTGA 651 43.01 MVRGKIEMKRIENETSRQVTFSKRRSGLLKKAFELSVLCDAEVAVIIFSQKGRLYQFSSSEMQNTIERYHKCGKDVQTNRLDMEQYIQHLKLESTSLTKKIELLQVSQRKFLGHQSCSSSIEELQELSVQLEQSLCRIRARKAQLFMEQLEQLKAKERLLLEENAKLISKVKPWTIVRQAGGAQFFEKTNNGSQSRESTKNSDYVETDLVIGLRCS 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 568720 572825 + Conep14aG0012600.1 Cone14ag0123 451972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0123 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone14ag0123 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone14ag0123 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone14ag0123 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone14ag0123 216 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone14ag0123 216 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone14ag0123 216 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Cone14ag0123 216 Pfam K-box region 88 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone14ag0123 216 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone14ag0123 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone14ag0123 216 Gene3D - 13 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone14ag0123 216 ProSiteProfiles K-box domain profile. 87 183 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone14ag0123 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone14ag0123 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 191 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone14ag0123 216 Coils Coil 143 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0123 Cone-Chr14:568720 Cone17ag0728 Cone-Chr17:5336181 1.03E-39 dispersed
Cone14ag0123 Cone-Chr14:568720 Cone15ag0131 Cone-Chr15:606443 7.72E-114 wgd
Cone14ag0123 Cone-Chr14:568720 Cone15ag0346 Cone-Chr15:1607150 3.33E-63 wgd
Cone14ag0123 Cone-Chr14:568720 Cone18ag1119 Cone-Chr18:8126848 3.63E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44702 PF05645 RNA_pol_Rpc82 2.50E-05 CL0123 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0123 - - - 0.0