Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0157 ATGGCGCTCTCTCGTTTACTTCATATAAGGCCAGGCCTCCATTTCCATGGCAGAGGGATTCCGATTCCGTCTAGGTGGTTCTCTTTTTCTCCGTCGCCAAGTGGTGGCGCACAGAAGCTGCCTTCAGCGGCAACAGTGGAAGATGAAGCTGCGAATATGGAATCGAACGTGAAGAAATGTATAGAAAGGGAAGCAATTTTGAAGAACTCGGCACTAGTTAAAAACAAAGCAGGAGGATCATGGCATGCTTTGACAGACCTTTTTTGTAACCTGAAGGAAAAGATAATTGGTTCTGGCGACTTCAAGGATCAGATTTGTAGACTGCGAGATTCTGTGCCCCATGGGACAGAAGTCAAGATTGTTCCGCCACAGAATAGTCAGCACTTTACTGAACTTGATGAGGTTTGTCGGAAAGAGAGTGTATCAGTAATTGCAGTGCCTTCTCATAGTTCAACTAGTGATGGAAGCTCTTCCCCTGTTGTTTTCAGCTCAGAAGTTTCTAACCCTGTTGAAACTAATAATTGCGCACATACAACTGAACTAGTTGAGAATGAAGGTTGGGTTTTATCTTCAGAAGCCAAAACGTGGACTCTCAATGATGATAAGAATGTTTCTACAACAGTCTCATTGCAATTGGAGAAGAATTCTAATGCTTTAATTGATTCAGTGCCAGTCACTTCTCAAGATACGAGTTCTTCAAATCTTGAGCCTCGAAATGAGCAAAGCCAGTTTGAGGGTGTGAATGAAACAAATCCAGCAAAAACTGAAAGGATTCGACTTGGTAACAGAACCAAAATGGATGTTATAAAACAACATGCCGGATTTAATCCAAAGGCTATGTCATCTAATTGTACAAAAAAGGTTGTGAGGTTGACTGACCTGTTTAATATGACAATGAATGATGATCAATCGGCACGAGAATTTCCCAATGAAAAGAATATTTTGATGTCAAATGCTGGATTTCTGGAAGCTTCGGAACGAGCATCGGGTGAAGGTACAGCAGCCAATTCTGCTATTAAGTGTTTAATCAAATGCATTCGAGAGCTTCCTGTGCTTCCTAGAGAACAGTGTGTTAAAACGTCAGAGGAGAATACTCTCTGGTCTGACATGGACAATAGGGCCACTGTGAAACTGATCCCAAGTCACTGTGAAACTGGGCCTAGTGTAAAAGAAACTGTTACTAAGGAAAAACCCAAGTCACTAAAGGGCCTTGACATGGAATCGAAATGTAATGGAGTCTCTAATAGTGCGAAACAATCAAATTCCATTGTGCACAAAGAATCTAAGCCACTAGTGAAAGACGGTGAGATAAAACTAAGTTCAAAGGCTTCTTGTAAAGATTCAACGGCATTGGATTTGGAAGAGGAATCAGAGGACAACAAAGTATTACTAAGGTTTTTGAGCAGGGATGTTGAAAACTGTGATATCTTTATATCTTTTAGGGATTGTGGGCCGATAGTAAAGATTCAAGAACTTCCTCCAGTTGAAGGAGCCCTTTTCAAGGATGCTTATGTTCATTTTAAGACAAAAAGTGGAATGATGAAAGCTATTAAGAAAACTGATCTTATGATGAGGAATAGAGATGCCATTGTGGAGTCTGCATCTTCACAAAATCTTCCCAGGAAGATTTCTATCCCAAGCTTGATTGGAGATCCTAGTGCACCTGTTTCACTGCTCAAGAATCCAACCCGAACAGTAGTAATTCGACAGTTAACTGATGACATAAGCTTACGCCATCTGAAAGAAGCTCTTTCCTTCTGTGGTAGTGCCATATCCAGCTTTTACATGGGCTCATCAAGCTCTGTTGCTTATGTAGAGTTTGAGACTGAAGATGCCAAGGAGAAGGCAATTGAATTGCGATCTGTAAAGGTTTTAGGGAGTGAGTTGCTAATCTTTAGAATCGATTCACCAAGAACAACAGTAGTCAGAATTTCAAAGATCAACAAGATGAACAATTTAAAACGCCTCTCCAAAGGGATGAAAAGTATCAATTCTATATGCAATTCCTCTGGGCAGGTGAAGTTTGTAGTAGCGAGAAGTAATTACATTGTCGATGTCCATTTCAAGCTCGCCGAATGGCCTAATATGTTGAACATTCTCAACAGTTTAAATGGAAAAGAAGTTGATGGCGAGATATGGATTGCTAAACCTGCACCTTACTTCCCTCCGGATATACTTCAAGTTCTATGGAGTGAACCCCATGAAAGACAGCATGTCAGATCGGTTTTAAGCAGTTTATTAAAGAGACTAGATCATCCTGCAGATTCGACCAAGTTGATTCCTTTAGTGGCTGAATATTTTGGAGTTGAGAATCTATAA 2319 40.58 MALSRLLHIRPGLHFHGRGIPIPSRWFSFSPSPSGGAQKLPSAATVEDEAANMESNVKKCIEREAILKNSALVKNKAGGSWHALTDLFCNLKEKIIGSGDFKDQICRLRDSVPHGTEVKIVPPQNSQHFTELDEVCRKESVSVIAVPSHSSTSDGSSSPVVFSSEVSNPVETNNCAHTTELVENEGWVLSSEAKTWTLNDDKNVSTTVSLQLEKNSNALIDSVPVTSQDTSSSNLEPRNEQSQFEGVNETNPAKTERIRLGNRTKMDVIKQHAGFNPKAMSSNCTKKVVRLTDLFNMTMNDDQSAREFPNEKNILMSNAGFLEASERASGEGTAANSAIKCLIKCIRELPVLPREQCVKTSEENTLWSDMDNRATVKLIPSHCETGPSVKETVTKEKPKSLKGLDMESKCNGVSNSAKQSNSIVHKESKPLVKDGEIKLSSKASCKDSTALDLEEESEDNKVLLRFLSRDVENCDIFISFRDCGPIVKIQELPPVEGALFKDAYVHFKTKSGMMKAIKKTDLMMRNRDAIVESASSQNLPRKISIPSLIGDPSAPVSLLKNPTRTVVIRQLTDDISLRHLKEALSFCGSAISSFYMGSSSSVAYVEFETEDAKEKAIELRSVKVLGSELLIFRIDSPRTTVVRISKINKMNNLKRLSKGMKSINSICNSSGQVKFVVARSNYIVDVHFKLAEWPNMLNILNSLNGKEVDGEIWIAKPAPYFPPDILQVLWSEPHERQHVRSVLSSLLKRLDHPADSTKLIPLVAEYFGVENL 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 767910 771202 + Conep14aG0016100.1 Cone14ag0157 452006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0157 772 SMART rrm1_1 565 632 IPR000504 GO:0003723(InterPro)
Cone14ag0157 772 SMART rrm1_1 461 532 IPR000504 GO:0003723(InterPro)
Cone14ag0157 772 Pfam RNA recognition motif 566 628 IPR000504 GO:0003723(InterPro)
Cone14ag0157 772 MobiDBLite consensus disorder prediction 221 250 - -
Cone14ag0157 772 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 564 647 IPR000504 GO:0003723(InterPro)
Cone14ag0157 772 Gene3D - 560 656 IPR012677 -
Cone14ag0157 772 SUPERFAMILY RNA-binding domain, RBD 562 713 IPR035979 GO:0003676(InterPro)
Cone14ag0157 772 Coils Coil 43 63 - -
Cone14ag0157 772 MobiDBLite consensus disorder prediction 221 257 - -
Cone14ag0157 772 SUPERFAMILY RNA-binding domain, RBD 456 543 IPR035979 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0157 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g729 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0157 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .