Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone14ag0178 | ATGAATTGCTCGATTTCCGGTGAGGTTCCGGAAGAGCCGGTGGTCTCGAAGAAGTCCGGGCTACTATATGATAAGCGTTTAATCGAGAGGCACATCCTGGACTATGGAAAATGCCCAGTTAGCGGTGAGCCACTTTCCATGGATGACATTGTTCCAATCAAAACTGGGAAGATAGTGAAGCCGAGGCCTGTGCAGGCTGCTAGCATTCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGATGGGTTAATGCTGTCTAATTTTGCATTGGAGCAACAACTGCATACAGCAAGACAAGAGCTAAGTCATGCATTATACCAGCATGATGCTGCCTGTCGCGTTATTGCAAGGCTTAGAAAAGAAAGGGATGAGGCAAGGACATTACTTGCTCAGGCAGAGAGACAGATGCCAATATCAGCATCAACTGCAATTTCGGGAGATTCTTCTATATACACTAATGGGAAAAGAGCTGCTGAGGATGAGGACTTGGGACCTGATGGAAAGAGAATACGCCCTGGAATTTCTGCTGCAGTCATTTCTGAGCTGACTGATTGTAATGCTGCTCTGTCTCAGACGCGGAAGAAGCGGCAGATAGCAGCAACATTGGCTCCTGTTGAGGCTTTAGAAAGCTACACCCAGATATCAAGTCATCCCCTTCATAAAACTAGCAAGCCAGGCATTGCATCTCTTGACATCCATTATAACAAGGATATCATCGCTACTGGAGGTCTCGACACAAATGCTGTAATTTTTGATTGGTCGTCAGGGCAGATTTTATCGACGCTCAGTGGCCATTCCAAGAAGGTCACTAGTGTGAAATTTGTGGCTCAGGATGATTTTTTCTTAACCAGTTCAGCTGATAAGACTGTTCGAGTTTGGCAAGGAACTAATGATGGTAATTACAACTGTAGACATATCCTGAAAGATCATGCTGCCGAGGTGCAAGCTGTTACGGTGCATGCTACAAATAACTATTTTGTGACTGCATCTCTTGACAACACCTGGTGCTTTTACGAACTAGCCTCTGGTTTATGTCTGACACAGGTTGTGGACACATCAGGAACTGAGGGATACACTTCGGCAGCTTTTCATCCTGATGGTCTTATCCTTGGCACAGGCACCTCGGAGGCCCTTGTCAAAATTTGGGACGTAAAAAGTCAGACAAATGTTGCTAGATTTGATGGACATGTTGGGCCAGTGACTGCCATATCCTTCTCTGAAAATGGTTACTTCCTTGCGACTGCAGCTCAAGATGGTGTCAAGCTGTGGGATCTACGCAAATTGAAGAACTTCCGCACATTTGCTCCATATGATTCAGATACTCCCACAAATTCTGTGGAATTCGATCATAGTGGATGCTACCTTGCAGTAGCAGGTTCAGACATAAGAGTATACCAAGTTGCCAACGTGAAATCAGAATGGAACTGTATCAAGACTCTTCCAGATCTATCTGGCACAGGCAAAGCAGTTTGTGCTAAATTCGGTCCAGATGCTAAATATCTTGCAGTGGGATCTATGGACCGAAATCTCCGGATCTTTGGCTTGCCCGAGGAAGACGGTCCATCAGAGCCATAA | 1575 | 45.52 | MNCSISGEVPEEPVVSKKSGLLYDKRLIERHILDYGKCPVSGEPLSMDDIVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLRKERDEARTLLAQAERQMPISASTAISGDSSIYTNGKRAAEDEDLGPDGKRIRPGISAAVISELTDCNAALSQTRKKRQIAATLAPVEALESYTQISSHPLHKTSKPGIASLDIHYNKDIIATGGLDTNAVIFDWSSGQILSTLSGHSKKVTSVKFVAQDDFFLTSSADKTVRVWQGTNDGNYNCRHILKDHAAEVQAVTVHATNNYFVTASLDNTWCFYELASGLCLTQVVDTSGTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQTNVARFDGHVGPVTAISFSENGYFLATAAQDGVKLWDLRKLKNFRTFAPYDSDTPTNSVEFDHSGCYLAVAGSDIRVYQVANVKSEWNCIKTLPDLSGTGKAVCAKFGPDAKYLAVGSMDRNLRIFGLPEEDGPSEP | 524 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 830425 | 835593 | + | Conep14aG0018200.1 | Cone14ag0178 | 452027 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone14ag0178 | 524 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 351 | 392 | IPR001680 | GO:0005515(InterPro) | |
| Cone14ag0178 | 524 | CDD | WD40 | 226 | 513 | - | - | |
| Cone14ag0178 | 524 | Pfam | Prp19/Pso4-like | 66 | 131 | IPR013915 | - | |
| Cone14ag0178 | 524 | Coils | Coil | 115 | 135 | - | - | |
| Cone14ag0178 | 524 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 262 | 294 | - | - | |
| Cone14ag0178 | 524 | Gene3D | - | 201 | 515 | IPR015943 | GO:0005515(InterPro) | |
| Cone14ag0178 | 524 | ProSiteProfiles | U-box domain profile. | 1 | 70 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Cone14ag0178 | 524 | FunFam | Pre-mRNA-processing factor 19, putative | 1 | 58 | - | - | |
| Cone14ag0178 | 524 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 393 | 433 | IPR001680 | GO:0005515(InterPro) | |
| Cone14ag0178 | 524 | PANTHER | PRE-MRNA-PROCESSING FACTOR 19 | 1 | 517 | IPR038959 | GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0004842(PANTHER)|GO:0005737(PANTHER)|GO:0006281(InterPro)|GO:0061630(InterPro)|GO:0071006(PANTHER) | |
| Cone14ag0178 | 524 | SMART | WD40_4 | 255 | 294 | IPR001680 | GO:0005515(InterPro) | |
| Cone14ag0178 | 524 | SMART | WD40_4 | 342 | 383 | IPR001680 | GO:0005515(InterPro) | |
| Cone14ag0178 | 524 | SMART | WD40_4 | 473 | 514 | IPR001680 | GO:0005515(InterPro) | |
| Cone14ag0178 | 524 | SMART | WD40_4 | 300 | 339 | IPR001680 | GO:0005515(InterPro) | |
| Cone14ag0178 | 524 | SMART | WD40_4 | 386 | 424 | IPR001680 | GO:0005515(InterPro) | |
| Cone14ag0178 | 524 | SMART | WD40_4 | 427 | 466 | IPR001680 | GO:0005515(InterPro) | |
| Cone14ag0178 | 524 | SMART | WD40_4 | 210 | 252 | IPR001680 | GO:0005515(InterPro) | |
| Cone14ag0178 | 524 | SUPERFAMILY | RING/U-box | 1 | 53 | - | - | |
| Cone14ag0178 | 524 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 262 | 294 | IPR001680 | GO:0005515(InterPro) | |
| Cone14ag0178 | 524 | FunFam | pre-mRNA-processing factor 19 | 199 | 515 | - | - | |
| Cone14ag0178 | 524 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 393 | 426 | - | - | |
| Cone14ag0178 | 524 | CDD | RING-Ubox_PRP19 | 1 | 54 | - | - | |
| Cone14ag0178 | 524 | SUPERFAMILY | WD40 repeat-like | 217 | 513 | IPR036322 | GO:0005515(InterPro) | |
| Cone14ag0178 | 524 | Pfam | WD domain, G-beta repeat | 389 | 424 | IPR001680 | GO:0005515(InterPro) | |
| Cone14ag0178 | 524 | Pfam | WD domain, G-beta repeat | 475 | 513 | IPR001680 | GO:0005515(InterPro) | |
| Cone14ag0178 | 524 | Pfam | WD domain, G-beta repeat | 256 | 293 | IPR001680 | GO:0005515(InterPro) | |
| Cone14ag0178 | 524 | Pfam | WD domain, G-beta repeat | 302 | 338 | IPR001680 | GO:0005515(InterPro) | |
| Cone14ag0178 | 524 | Pfam | WD domain, G-beta repeat | 358 | 383 | IPR001680 | GO:0005515(InterPro) | |
| Cone14ag0178 | 524 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 60 | IPR013083 | - | |
| Cone14ag0178 | 524 | SMART | Ubox_2 | 1 | 66 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone12ag0639 | Cone-Chr12:5793465 | Cone14ag0178 | Cone-Chr14:830425 | 5.68E-08 | dispersed | |
| Cone14ag0178 | Cone-Chr14:830425 | Cone15ag0188 | Cone-Chr15:890436 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone14ag0178 | K10599 | - | vvi:100249408 | 917.916 |