Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0183 ATGGCAGTCACCGCCGCCGCTGCCGTCGGTTCATCATTCTGTTCATCCATGCACACACTCCGATGCACAAGATCCAACTACAACCCCTGGCCCGCTGATCTTCCCCTCCTTAGAATCTCTTCTTCACAGTCTCTCACCCTTGAACAACCCTTTCAAGCGATCGGTGCCGCCTCGCAGAAGTGGCGCGTTCTCAGGATATCCGCCGCTGTCGCACAAGAAGAGACTGCTTTGACGGTTGAGGCGGAAGAGGGGTTGCCAGAGGAGGAGGAGGTGGTGGGGGATGGCGGAGACAAACCGGAGCCCGCGGAGGAGGCTGGCTCTGTGAATACAAAGCTTTACTTTGGAAATTTGCCTTATAGTGTGGATAGTGCTCAGCTTGCTGGAATCATTCAAGATTATGGAAGCCCAGAACTTGTTGAGGTTCTTTATGACAGGGATAGTGGAAAAAGCAGAGGATTTGCATTTGTGACTATGAGTAGTCTTGAAGATTGTAATGCTGTTATTCAGAATCTTGATGGAAGTGTTTATATGGGCCGGACATTGCGGGTGAATTACTCGGATAAACCGAAACCGAAAGAACCACTATATCCGGAAACAGAACATAAACTTTTCATAGGGAACCTATCATGGTCAGTCACGTCTGATAGTTTAACACAAGCTTTTCAAGAACATGGAAATGTGGTGGGAGCAAGGGTGCTCTATGATGGCGAAACAGGACGGTCAAGAGGCTATGGTTTCGTTTGCTACGCGACTAAATCCGAATTGGAAACCGCACTTCAATCTCTCGACGGAGTGGAATTGGATGGAAGGCCGATGCGTGTAAGCTTGGCTGAAGGAAAACGGCGATACGATGAGCAAAAGGAATGA 867 49.02 MAVTAAAAVGSSFCSSMHTLRCTRSNYNPWPADLPLLRISSSQSLTLEQPFQAIGAASQKWRVLRISAAVAQEETALTVEAEEGLPEEEEVVGDGGDKPEPAEEAGSVNTKLYFGNLPYSVDSAQLAGIIQDYGSPELVEVLYDRDSGKSRGFAFVTMSSLEDCNAVIQNLDGSVYMGRTLRVNYSDKPKPKEPLYPETEHKLFIGNLSWSVTSDSLTQAFQEHGNVVGARVLYDGETGRSRGYGFVCYATKSELETALQSLDGVELDGRPMRVSLAEGKRRYDEQKE 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 845196 846770 + Conep14aG0018700.1 Cone14ag0183 452032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0183 288 SMART rrm1_1 202 275 IPR000504 GO:0003723(InterPro)
Cone14ag0183 288 SMART rrm1_1 111 184 IPR000504 GO:0003723(InterPro)
Cone14ag0183 288 Gene3D - 191 288 IPR012677 -
Cone14ag0183 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723(InterPro)
Cone14ag0183 288 FunFam 28 kDa ribonucleoprotein, chloroplastic 192 283 - -
Cone14ag0183 288 SUPERFAMILY RNA-binding domain, RBD 102 194 IPR035979 GO:0003676(InterPro)
Cone14ag0183 288 Gene3D - 67 190 IPR012677 -
Cone14ag0183 288 PANTHER OS02G0815200 PROTEIN 45 280 IPR050502 GO:0003729(PANTHER)|GO:0009535(PANTHER)|GO:1901259(PANTHER)
Cone14ag0183 288 MobiDBLite consensus disorder prediction 81 104 - -
Cone14ag0183 288 SUPERFAMILY RNA-binding domain, RBD 194 282 IPR035979 GO:0003676(InterPro)
Cone14ag0183 288 CDD RRM2_NsCP33_like 202 277 IPR048289 -
Cone14ag0183 288 Pfam RNA recognition motif 112 182 IPR000504 GO:0003723(InterPro)
Cone14ag0183 288 Pfam RNA recognition motif 203 272 IPR000504 GO:0003723(InterPro)
Cone14ag0183 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 279 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0183 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0183 Cone-Chr14:845196 Cone3ag0277 Cone-Chr3:1435281 8.92E-48 dispersed
Cone14ag0183 Cone-Chr14:845196 Cone15ag0192 Cone-Chr15:904939 5.72E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g784 . . Bda03g01097 . Bpe04g00983 . Bma04g01022 . . . . Cma14g01844 . . . Cpe08g00361 Cpe03g01544 . . . . . . . . . . . . . . Cone14ag0183 Cone15ag0192 . . Lsi05g01774 . . Cme06g00447 . . . . . . . . . Cmo06g01297 Cmo14g01887 . . . . . . . . . . . . . Cla05g00406 Cam05g0443 Cec05g0451 Cco05g0451 Clacu05g0440 Cmu05g0418 Cre05g0480 . Csa03g01166 Chy06g00428 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012811 1 0 0 1 1 1 1 1 1 1 1 1 1 0 1 2 1 2 2 1 1 1 1 1 0 1 1 1 0 1 28