Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0185 ATGTACTGGCTTGCCACCAGAAACGTCATCGTGGCGTTTCCACGGTGGCGTTCTCTGGCTCTTCTTCTTCGTCCGGCCGTTCATCGATTCGACTCATGCACTGTATCGCCCCTGCTTCCAAGCGACAAATTGGTACCGATTCGCTGTTTCAAGGAGCAGAAGCATTTTAGTGGAAGCATAAAATCTGCTAAGAAAGTTAAGTCGGCGAACAATATTCTTGATGATAAGGACCTTGCTCATGTTCTATGGTGGAAGGAGAGGATGCTTATATGCAGAAAGCCTTCAACTGTCCAGCTGGTTAAAAGGCTTGTGTATTCCAATTTGCTAGGATTGGATGCTAATTTGAGGAATGGGAGTCTTAAAGAAGGAACTCTTAACTGGGAGATTTTGCAGTTCAAGTTAAAGTTTCCTCGAGAAGTTTTGCTCTGCAGAGTTGGGGATTTTTATGAAGCGCTTGGAATAGATGCTTGTATTCTTGTTGAATATGCTGGTTTGAATCCTTTTGGTGGCCAACGTTCAGATAGCATTCCAAAAGCTGGTTGCCCTGTTGTGAATCTGCGACAAACCTTGGATGATTTGACTCGGAATGGGTTTTCAGTGTGCATAGTGGAAGAAGTTCAGGGTCCAATGCAAGCTCGATCACGCAAAGGTCGCTTTATATCCGGGCATGCCCATCCTGGCAATCCTTATGTCTTTGGACTTGTTGGTATTGATCATGATCTTGACTTTCCAGAACCAATGCCTGTAGTAGGAATATCTCGATCTGCAAGAGGGTATTGCATAAATTTGGTGCTAGAGACTATGAAGACTTATTCTTCAGAGGATGGTTTAACTGAAGAAGCATTGGTTACTAAACTTCGTACATGTCAGTATCATCATTTATTTCTGCATACATCATTAAGACACAATTCCTCAGGCACTTGTCGTTGGGGAGAATTTGGTGAGGGAGGCCTATTGTGGGGAGAATGTAATTCCAGACATTTTGAATGGTTTGATGGCGATTCTAATGTTGATCTTCTGTCAAAGGTTAAGGAACTCTATGGTCTTGATAATGATGTCACTTTTAGGAACATCGCCATTTCTTCAGAGAATAGGCCTCGGTCTCTATCCCTAGGAACAGCAACACAAATTGGTGCTATACCAACTGAGGGAATACCTTGTTTGTTGAAGGTTTTGCTTCCTTCAAATTGTTCGGGTCTGCCTGCATTGTATGTTAGAGATCTTCTCCTCAATCCTCCTGCATATGAGATTGCATCCACAATTCAAGCAACATGCAAACTTATGAGTAATGTTACGTGCTCGTTTCCAGAGTTCACTTGCTTATCACCTGCAAAGCTTGTGAAACTCTTGGAATTAAGAGAAGCCAATCATATTGAATTTTGTAGAATAAAGAATGTGCTTGATGAAATACTGCACATGCATAGAAATTCTGAGCTCAATGAAGTCCTTAAAATGTTGATGGATCCTACATGGGTGGCCACGGGGTTGAAAATTGACTTTGAAATGTTGGTTAGTGAATGTGAATGGGCCTCCTGTAAAATTGGTGAAATGATCTTTCTAGATGGTGAAAATAATCAGAAAACTAGTTCCTTTCCTGTCATTCCTTCAGACTTCTTTGAGGATATGGAGTCTTCATGGACAGGCCGCATAAAGAGGATCCATCTTAAGGAAGAATTTGCAGAAGTTGAAGAAGCAGCCATGGCATTATCTCAAGCGGTTACTGAAGATTTCCTCCCAGTTATTTCGAGAATAAAGGCTATTATGGCCCCACTTGGAGGCCCAAAGGGAGAAATAGTGTATTCTCGGGAAAATGAAGCAGTTTGGTTTAAGGGAAAACGATTTGCACCTTCTGTATGGGCCGGTACTGATGGAGAAGAACAAATTAAACAGCTTAAATCTGCTGTAGATTCAAAGGGTAAAAAAGTTGGAGAAGAGTGGTTTACAACAATTAAAGTAGAAAAGGCTTTAGCAAGGTACCATGAGGCAGGTGCTAAAGCTAAAGCAAGGGTCTTGGAATTGTTAAGAGAACTTTCTTCTGAATTGCAAGCTAAAATCAACATCCTTGTATTTGCTGCCATGCTACTTGTTATTGCAAAGGCATTATTTTGTCATGTGAGTGAAGGGAGGAGGAGGAAATGGGTATTTCCTACTCTTGCAGGGTCTGATCAAAATGAATTGAAGCTTGTTGGTTTATCACCATATTGGTTCAATATTGCAGAAGGCAGTGCTGTGCATAACACAGTCGATATGAAGTCATTGTTTCTTTTGACTGGACCAAATGGAGGTGGTAAATCAAGCTTGCTTCGATCAATCTGTGCTGCTGCGTTACTTGGAATATGTGGATTCATGGTCCCTGCAGAATCAGCCTTAATTCCTCATTTTGATTCCATTAGGCTCCAAATGAAATCTTATGACAGCCCTGCTGATGGAAAAAGTTCATTCCAGGTAGAGATGTCTGAGATGCGGTCAATTGTGACGGGTGTGACTGAAAGAAGCCTTGTTCTTGTGGATGAAATCTGCCGAGGGACAGAAACAGCTAAAGGGACTTGCATTGCTGGTAGCATTATTGAAACACTTGATAAAATCGGATGTCTAGGAATTGTTTCAACTCATTTGCATGGAATATTCTCCTTACCACTAAAGACAAAAAACACCGTGTACAAAGCAATGGGAACTGTTTGTCTTGAAGGGCAGACAAAACCCACTTGGGAGTTGATAGATGGAATCTGTAGAGAGAGCCTTGCTTTTGAAACGGCAAAGAGGGAAGGAGTCCCTGAGGAAATAATCCAGAGAGCTCAAGACTTGTACCATTCAGTTTATGCTGAAGCGGGAATGAATTTGGATTTGGAAATGGAAATGGATTGCTCTTCATCTACGGGTTCTAATAATACCCATGATTCCGATCTTGAGTTGTATAGTACTAAATCCGGAGTTGTAGATTATAAGATAGAAACAAGAAACAAAATGGAACTCTTGTTCGAGGAAGTCAAGAGTGCTATCATGTTGATTTGTCAGAAGAAGGTGATCGACCTTTCCAAACATGCAGAAATATGCTGTGTTTTGATTCGTACTAGAGAACAGCCGCCTCCATCAGCTGTTGGTGCTTCTTGTGTCTATATCATGCTCAGACCTGATAATAAATTGTACATAGGACAGAGTGATGATCTCGAGGGTCGAATTCGGACACATAGGACAAGTGAAGGAATGCGAAATGCATCATTCCTTTACTTCACAGTATCTGGAAAGAGCCTGGCTTGCCAATTAGAAACTCTTCTCATCAATCAGCTCCCAAGTCAAGGATTCCAATTGATCAATGTGGCTGATGGAAAGCATCGGAATTTCGGCTCTTCCGAGGTATCCCTTGAAAATTTCGTCGCTTGCTCGTGA 3387 41.63 MYWLATRNVIVAFPRWRSLALLLRPAVHRFDSCTVSPLLPSDKLVPIRCFKEQKHFSGSIKSAKKVKSANNILDDKDLAHVLWWKERMLICRKPSTVQLVKRLVYSNLLGLDANLRNGSLKEGTLNWEILQFKLKFPREVLLCRVGDFYEALGIDACILVEYAGLNPFGGQRSDSIPKAGCPVVNLRQTLDDLTRNGFSVCIVEEVQGPMQARSRKGRFISGHAHPGNPYVFGLVGIDHDLDFPEPMPVVGISRSARGYCINLVLETMKTYSSEDGLTEEALVTKLRTCQYHHLFLHTSLRHNSSGTCRWGEFGEGGLLWGECNSRHFEWFDGDSNVDLLSKVKELYGLDNDVTFRNIAISSENRPRSLSLGTATQIGAIPTEGIPCLLKVLLPSNCSGLPALYVRDLLLNPPAYEIASTIQATCKLMSNVTCSFPEFTCLSPAKLVKLLELREANHIEFCRIKNVLDEILHMHRNSELNEVLKMLMDPTWVATGLKIDFEMLVSECEWASCKIGEMIFLDGENNQKTSSFPVIPSDFFEDMESSWTGRIKRIHLKEEFAEVEEAAMALSQAVTEDFLPVISRIKAIMAPLGGPKGEIVYSRENEAVWFKGKRFAPSVWAGTDGEEQIKQLKSAVDSKGKKVGEEWFTTIKVEKALARYHEAGAKAKARVLELLRELSSELQAKINILVFAAMLLVIAKALFCHVSEGRRRKWVFPTLAGSDQNELKLVGLSPYWFNIAEGSAVHNTVDMKSLFLLTGPNGGGKSSLLRSICAAALLGICGFMVPAESALIPHFDSIRLQMKSYDSPADGKSSFQVEMSEMRSIVTGVTERSLVLVDEICRGTETAKGTCIAGSIIETLDKIGCLGIVSTHLHGIFSLPLKTKNTVYKAMGTVCLEGQTKPTWELIDGICRESLAFETAKREGVPEEIIQRAQDLYHSVYAEAGMNLDLEMEMDCSSSTGSNNTHDSDLELYSTKSGVVDYKIETRNKMELLFEEVKSAIMLICQKKVIDLSKHAEICCVLIRTREQPPPSAVGASCVYIMLRPDNKLYIGQSDDLEGRIRTHRTSEGMRNASFLYFTVSGKSLACQLETLLINQLPSQGFQLINVADGKHRNFGSSEVSLENFVACS 1128
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 853252 859181 + Conep14aG0018900.1 Cone14ag0185 452034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0185 1128 Gene3D DNA repair protein MutS, domain I 121 224 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone14ag0185 1128 SUPERFAMILY DNA repair protein MutS, domain I 117 227 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone14ag0185 1128 ProSitePatterns DNA mismatch repair proteins mutS family signature. 832 848 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone14ag0185 1128 PANTHER MUTL PROTEIN ISOFORM 1 1 1125 IPR053276 -
Cone14ag0185 1128 SMART mutATP5 751 937 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone14ag0185 1128 CDD ABC_MutS_homologs 741 924 - -
Cone14ag0185 1128 Pfam MutS domain I 131 228 IPR007695 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone14ag0185 1128 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 725 937 IPR027417 -
Cone14ag0185 1128 SUPERFAMILY GIY-YIG endonuclease 1036 1098 IPR035901 -
Cone14ag0185 1128 Pfam GIY-YIG catalytic domain 1037 1074 IPR000305 -
Cone14ag0185 1128 Pfam MutS domain V 755 937 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone14ag0185 1128 Gene3D - 716 1011 IPR027417 -
Cone14ag0185 1128 FunFam DNA mismatch repair protein 725 1003 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0185 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0185 Cone-Chr14:853252 Cone16ag0753 Cone-Chr16:8527948 3.44E-20 dispersed
Cone14ag0185 Cone-Chr14:853252 Cone11ag0689 Cone-Chr11:4682090 1.08E-23 transposed
Cone14ag0185 Cone-Chr14:853252 Cone18ag0740 Cone-Chr18:4049063 1.42E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g793 . . . . . Bpe14g01287 . . . . . . . Car14g01656 . . Cpe03g01548 . . . . . . . . . . . . . . Cone14ag0185 . . . . . . Cme06g00444 Blo02g00683 . . Bda13g00033 . . Bma02g00746 . . . Cmo14g01893 . . . . . . . . . . . . . . . . . . . . . Csa03g01161 Chy06g00424 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010615 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32