Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0187 ATGGCTTCCACAATTTTTAGAGGGATTCAAACCCACCCTCTCCTCCTTTACCCAACAGCTTTCTTCAGTAAAAGAACCAGTCTTCTCTACTGCACAATGAAAAGCACTCAAACCCAAACACCAACTCAAGAGAAAAACCAAAACAACCCTACAATCAAATCCGCCCCACTTAACCCAAACAAATCGTTGAATCCAATCTCTAAAGATTATGAAGCAATCATAGGCATAGAAACCCATGTCCAGCTTTCCACTCTAACTAAGGCCTTTTGCACCTGCCCATACAGCTATGGCTCTCTACCCAATACCAGTATCTGCCCCATCTGTATGGGCCTTCCTGGGGCCTTACCTGTTTTGAACTCGAAAGTGATCGAATCTGCAGTTAGAGTCGGCCTTGCTTTAAACTGTAATTTGTCTTTCAACTCGAAGTTCGATAGGAAACAATACTTTTATCCAGATCTTCCAAAAGGGTATCAGATTTCTCAGTTTGATATCCCAATTGCAACTGGTGGGTACCTTGATTTGGACCTTCCTATTGAATTTGGTGGCGGGCATAGAAGGTTTGGGATTACTAGGGTTCATATGGAAGAAGATGCCGGAAAGCTGATTCATTCCGATAATGGAACTTTCTCTCAGGTTGACTTGAATAGAGCAGGGGTGCCGTTGCTTGAGATTGTTTCCGAGCCTGATATGAGGACAGGGATTGAAGCAGCAGAATATGCAGCTGAATTACAGAGGTTGGTTAGGTATTTAGGTGTTGGTAATGGTAATATGCAAGAAGGTTCTCTAAGGTGTGATGTGAATGTATCTGTTCGGCCTATTGGTCAATTAGAGTTTGGAACAAAGGTTGAGATAAAAAATTTGAACTCGTTTTCATCAGTGAGCAAAGCGATTGATTTTGAAATTTCTAGACAAGTACTCTTACATAGTCAAGGACAGAAAGATGAAATTGTGCAGGAAACTCGCCTTTGGGAAGAAGGCGCTCAGAAAACAGTCGCAATGAGGAAAAAGGAAGGACTTGCTGATTACCGATACTTTCCCGAACCAGACCTTCCGGAAGTTATTCTAACTAAGGACTATGTTGAGAAAATTAGGAACTCTTTGCCGGAACTTCCGGAGGTTAAGCGCAGGAGATATGAGAATATGGGCTTAAGCATGCAAGATGTCATTTTTCTTGCAAACGACAATAATGTAGCAGAATTTTTTGATGCAACTTTAGAAAAAGGGGCCAACGTGAAGCTAGCTGCCAATTGGATAATGGGTGATATTGCTGCATATATGAAAAATGAGAAGGTGACTATAAATGAGATTATGCTTAGCCCTCAAGAACTGGCCGAGTTGATAGCTTCTATCAAAGGCGGTACCATTAGTGGAAAGATTGGGAAAGAGATTCTTTTTGAGCTACTAGCCAAAGGTGGAACTGTTAAAGGGCTCATCGAAGAGAAGGATTTGGTTCAGATAGTAGATCCCATTGAGATCGAAAGAATGGTAGATAAAGTGATTGCTGATAATCCAAAACAGCTCGAGCAATATCGTGGCGGTAAGACCAAATTACAAGGCTTTTTTGCTGGCCAGGTGATGAAAGCATCGAAAGGTAAAGCGAACCCAGGTCTTCTAAATAAGATCCTTCTCGAAAAATTGGACGCTGCAAAAAGCTAA 1656 41.67 MASTIFRGIQTHPLLLYPTAFFSKRTSLLYCTMKSTQTQTPTQEKNQNNPTIKSAPLNPNKSLNPISKDYEAIIGIETHVQLSTLTKAFCTCPYSYGSLPNTSICPICMGLPGALPVLNSKVIESAVRVGLALNCNLSFNSKFDRKQYFYPDLPKGYQISQFDIPIATGGYLDLDLPIEFGGGHRRFGITRVHMEEDAGKLIHSDNGTFSQVDLNRAGVPLLEIVSEPDMRTGIEAAEYAAELQRLVRYLGVGNGNMQEGSLRCDVNVSVRPIGQLEFGTKVEIKNLNSFSSVSKAIDFEISRQVLLHSQGQKDEIVQETRLWEEGAQKTVAMRKKEGLADYRYFPEPDLPEVILTKDYVEKIRNSLPELPEVKRRRYENMGLSMQDVIFLANDNNVAEFFDATLEKGANVKLAANWIMGDIAAYMKNEKVTINEIMLSPQELAELIASIKGGTISGKIGKEILFELLAKGGTVKGLIEEKDLVQIVDPIEIERMVDKVIADNPKQLEQYRGGKTKLQGFFAGQVMKASKGKANPGLLNKILLEKLDAAKS 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 860309 863216 - Conep14aG0019100.1 Cone14ag0187 452036

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0187 551 Gene3D - 486 548 IPR023168 -
Cone14ag0187 551 ProSitePatterns Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 214 228 IPR017958 GO:0016884(InterPro)
Cone14ag0187 551 MobiDBLite consensus disorder prediction 39 60 - -
Cone14ag0187 551 Gene3D - 368 422 IPR042114 -
Cone14ag0187 551 SMART gatb_yqey_2 399 546 IPR018027 GO:0016884(InterPro)
Cone14ag0187 551 PANTHER GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED 69 546 IPR017959 GO:0016884(InterPro)|GO:0032543(PANTHER)|GO:0050567(PANTHER)|GO:0070681(PANTHER)
Cone14ag0187 551 SUPERFAMILY Glutamine synthetase/guanido kinase 71 368 IPR014746 GO:0003824(InterPro)
Cone14ag0187 551 NCBIfam Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB 69 546 IPR004413 GO:0016884(InterPro)
Cone14ag0187 551 SUPERFAMILY GatB/YqeY motif 369 472 IPR003789 GO:0016884(InterPro)
Cone14ag0187 551 Pfam GatB/GatE catalytic domain 73 361 IPR006075 GO:0016874(InterPro)
Cone14ag0187 551 Hamap Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 69 547 IPR004413 GO:0016884(InterPro)
Cone14ag0187 551 Pfam GatB domain 399 546 IPR018027 GO:0016884(InterPro)
Cone14ag0187 551 FunFam Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B 486 547 - -
Cone14ag0187 551 FunFam Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B 368 422 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0187 K02434 - - rcu:8265715 915.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g797 . Blo12g00135 . . Bpe04g00980 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0187 . . . . . Chy05g00285 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme05g00623
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007728 1 2 1 1 1 1 2 1 1 1 1 1 2 2 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 36