Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0189 ATGAAAACCCGAGGACTTTGGCTGAATTACGATAAACGGATCGTGGGTACGATTCCTGGAATCTACATTGTCGGGTTACATGGCCATCCTCAAGCTGGAATTGACTGCCTTCCGGCCAGTCAGAGTTCGAACGGAGAACCTATTGCTACAAGTATAATAGTCTCAGGTGGGTATGAAGATGATGAGGATTCCGGCGAGGTGATAATCTACACCGGTCAGGGTGGTCAGGACAAGTGTTACCGACAATGTGAGCATCAGACATTAGAAGGTGGAAACCTCACTTTAGAGAGAAGCACGAGGTATGGAATTGAAGTTAGAGTTATCAGAGGGATTAAGTATCATATACCAGGAAGGCTTTCTAGTGAAGTTTATGTTTATGATGGTTTATATAAAATCCATGACTATTGGTTTGATGTAGGGAAATCCGGTTTTGGTGTTTTTAAGTATAAGATAGTAAGAATTGAGGGTCAAGCTGAAATGGGTAGTTCAAGTTTGAAACTTGCTCAGTCTCTTAGGACTAGTCTTTTGTCGGTTCGACCTTCTGGTTATATTAGTCTAGATATTTCGATGAAGAAGGAGAAATTTCCGGTCCTTGTTTACAACGATATTGATAACGATCAGGAACCGTTATATTATCAATACCTCTTAAGGACTGTTTTTCCGCCTTTTGCTTTTCACCATTCCGGGCAAGGGACCGGCTGTGAATGTGTTTCGGGTTGTAAAGATGATTGCTTTTGTGCTATGAAAAATGGAGGGGAGTTTGCTTATGATCAAAACGGGTTTCTTATCAGAGGGAAACCTATAGTTTTTGAATGTGGGCCCTTTTGTAAATGTCCTCCTCATTGCCATAATCGGGTTAGCCAAAACGGGTTGAAGAATGGATTAGAAGTGTTCAGATCGAGAGAAACCGGATGGGGAGTTAGGTCTTTGGACTTAATTCATGCCGGGCAATTTATTTGTGAATATACAGGGGTCATATTGACCATGGATCAAGCTCAAGTCTTTTCAATGAACGGTGATAGATTGATTTATCCGAATCGGTTTTCGGAAAGATGGGCCGAGTGGGGGGATTTGTCTCAGATCGATTCGGGTTATGTTAGGCCATCTTACCCTTCTGTTCCTCCATTGGATTTTGCCATGGACGTGTTGAAAATGAGGAATGTCGCGTGTTATGTGAGCCATAGTTTGAGCCCTAATGTTATGGTGCAGTATGTGTTGTATGATCATAATAATTTGATGTTTCCGCACCTTATGCTTTTTGCTATGGAGAATATTCCTCCTTTGAGGGAGCTAAGCCTTGATTATGGCCTTGCTGATGAAGGGACCGCTAAGCTTTCGATCTGTAACTGA 1350 42.07 MKTRGLWLNYDKRIVGTIPGIYIVGLHGHPQAGIDCLPASQSSNGEPIATSIIVSGGYEDDEDSGEVIIYTGQGGQDKCYRQCEHQTLEGGNLTLERSTRYGIEVRVIRGIKYHIPGRLSSEVYVYDGLYKIHDYWFDVGKSGFGVFKYKIVRIEGQAEMGSSSLKLAQSLRTSLLSVRPSGYISLDISMKKEKFPVLVYNDIDNDQEPLYYQYLLRTVFPPFAFHHSGQGTGCECVSGCKDDCFCAMKNGGEFAYDQNGFLIRGKPIVFECGPFCKCPPHCHNRVSQNGLKNGLEVFRSRETGWGVRSLDLIHAGQFICEYTGVILTMDQAQVFSMNGDRLIYPNRFSERWAEWGDLSQIDSGYVRPSYPSVPPLDFAMDVLKMRNVACYVSHSLSPNVMVQYVLYDHNNLMFPHLMLFAMENIPPLRELSLDYGLADEGTAKLSICN 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 864936 866321 - Conep14aG0019300.1 Cone14ag0189 452038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0189 449 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 23 449 IPR025794 GO:0042054(InterPro)
Cone14ag0189 449 ProSiteProfiles SET domain profile. 293 436 IPR001214 GO:0005515(InterPro)
Cone14ag0189 449 Pfam SET domain 304 436 IPR001214 GO:0005515(InterPro)
Cone14ag0189 449 ProSiteProfiles Pre-SET domain profile. 232 290 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Cone14ag0189 449 SMART set_7 293 442 IPR001214 GO:0005515(InterPro)
Cone14ag0189 449 Gene3D SET domain 162 449 IPR046341 -
Cone14ag0189 449 ProSiteProfiles YDG domain profile. 4 153 IPR003105 -
Cone14ag0189 449 SMART G9a_1 11 157 IPR003105 -
Cone14ag0189 449 SUPERFAMILY PUA domain-like 2 165 IPR015947 -
Cone14ag0189 449 Gene3D - 15 161 IPR036987 -
Cone14ag0189 449 Pfam Pre-SET motif 190 285 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Cone14ag0189 449 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 1 436 IPR051357 GO:0003690(PANTHER)|GO:0016571(PANTHER)|GO:0042054(PANTHER)
Cone14ag0189 449 SUPERFAMILY SET domain 175 438 IPR046341 -
Cone14ag0189 449 Pfam SAD/SRA domain 22 157 IPR003105 -
Cone14ag0189 449 SMART preset_2 185 277 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0189 K11420 - - csv:101222210 758.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0189 Cone-Chr14:864936 Cone6ag0634 Cone-Chr6:3210666 3.58E-94 dispersed
Cone14ag0189 Cone-Chr14:864936 Cone4ag0368 Cone-Chr4:1667169 9.37E-268 wgd
Cone14ag0189 Cone-Chr14:864936 Cone7ag0355 Cone-Chr7:1542641 8.61E-270 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g800 . . . . . Bpe14g01288 . . . . Cma06g01287 Cma14g01850 Car06g01105 Car14g01658 . . Cpe03g01550 . . . . . . . . . . . . . . Cone14ag0189 . Cone7ag0355 Cone4ag0368 Lsi05g01779 . . Cme06g00442 Blo02g00682 . . Bda13g00032 . . Bma02g00745 . . Cmo06g01292 Cmo14g01895 . . . . . . . . . . . . . Cla05g00401 Cam05g0437 Cec05g0443 Cco05g0442 Clacu05g0432 Cmu05g0413 Cre05g0474 . Csa03g01158 Chy06g00421 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007214 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44708 PF01544 CorA 5.90E-08 No_clan Cone TR