Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0193 ATGTCTATGTACTCCAAACGTGGAAAGTGTAGAGATGCTTGCAAAGTGTTCGATGAAATGCCGGAGAGAAGTTCTGCTTCTTGGAATGTACTATTAGCGTCTAGTGGATGTGATATAGATATATGGAATGTTATTGAACTTATGGAGAGTGATGGGATAAAGCCAGATGCTTTTACAGTTTCAAGTCTTCTTTCTTTATGTAACGATGATAAGGTAGGATTGAATTATGGAAAAGAGCTTCATTGCTATATTATAAAGAATGGCTTAGGTTTCAATTTCGGCTCGAATGTTCATATGGGCTGTGGTTTGATTGATATGTACTCAAGGGGTAATAAAGTTATTATAAGCAGACGCGTTTTCGATCAAATGAGGAGTAGAAATATATATACCTGGACAGCCATGATTGGTGGTTATGTTGAAAATGGAGATTTCTTAGAAGCATTGATTCTTTTTCGTGAAATGCAGATGAGAGATGGGATAGAACCAAACATAGTATCGCTGGTGAGTGTTCTTCCTGCTTGTAATTCACATGCTGGACTAATTCAAGGCAAACAAATTCATGCATTTACTTTAAGAAAGGAATTGAATGACAATTCATCCTTATGTAATGCCTTGATTGATATGTATTCAAAATGTGGGAGCTTAGATTATGCAAGACTAGTATTTGAAGATGATCAATCCTTTTTACGAGATGCAATCTCTTGGACGACTATTGTTGCAGGGTATGGACTCCATGGAAGGGGCTTAGAAGCAATCGATTTGTATAATAAAATGTTAGAGCTTAAGATCAAACCAGACATGATAACAATAGTGGGGATTTTATCTGCTTGTGGGAGATCAGGTTTAGTAAACGAAGGGCTTGAAATCTACAACAAAGTGATCAACATATATAAGATTGAACCAACGGTTGAGATTTGTGCTAGTGTCGTTGATATGTTGGGCCGATCGGGCCAGCTTAATCAAGCCTTAGAGTTTATTGAAGCGATGCCGGTTAAACCAGGCCCAAGTGTTTGGGGTGCTCTAGTTACTGCTTCTATGATGCATGGAAACAGTGAGATTCAAGAACTGGCTTATAAGTTCCTTATCGAGGTTGAACCTGATAATTCATCTAATCTTGTTTCATTATCAAATTCATATGCTTCTTCGAGCAAATGGGATGTTGTGGCTGAAGTTAGAAAGGTCATGAAAGCACGCGGTTTACGGAAATTGCCTGGGTGTAGCTGGATTGGTGTTAATAAGAATACACATTGTTTTTATGTAGCCGATAAAGCACATCCTTGTTCCGAGTTAATCCATGAGGTTCTTGATAAACTTGTATTGATAATGAAGGGACCCAAATACTTTCCTGAAATCGAAATGCTATTTATTTACAACTAA 1377 37.55 MSMYSKRGKCRDACKVFDEMPERSSASWNVLLASSGCDIDIWNVIELMESDGIKPDAFTVSSLLSLCNDDKVGLNYGKELHCYIIKNGLGFNFGSNVHMGCGLIDMYSRGNKVIISRRVFDQMRSRNIYTWTAMIGGYVENGDFLEALILFREMQMRDGIEPNIVSLVSVLPACNSHAGLIQGKQIHAFTLRKELNDNSSLCNALIDMYSKCGSLDYARLVFEDDQSFLRDAISWTTIVAGYGLHGRGLEAIDLYNKMLELKIKPDMITIVGILSACGRSGLVNEGLEIYNKVINIYKIEPTVEICASVVDMLGRSGQLNQALEFIEAMPVKPGPSVWGALVTASMMHGNSEIQELAYKFLIEVEPDNSSNLVSLSNSYASSSKWDVVAEVRKVMKARGLRKLPGCSWIGVNKNTHCFYVADKAHPCSELIHEVLDKLVLIMKGPKYFPEIEMLFIYN 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 877023 879347 + Conep14aG0019700.1 Cone14ag0193 452042

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0193 458 Pfam E motif 348 409 IPR046848 -
Cone14ag0193 458 FunFam Pentatricopeptide repeat-containing protein 79 187 - -
Cone14ag0193 458 NCBIfam pentatricopeptide repeat 129 164 IPR002885 -
Cone14ag0193 458 NCBIfam pentatricopeptide repeat 233 266 IPR002885 -
Cone14ag0193 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Cone14ag0193 458 Pfam PPR repeat 202 223 IPR002885 -
Cone14ag0193 458 Pfam PPR repeat 1 23 IPR002885 -
Cone14ag0193 458 FunFam Small kernel1 203 428 - -
Cone14ag0193 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 162 IPR002885 -
Cone14ag0193 458 Pfam PPR repeat family 127 173 IPR002885 -
Cone14ag0193 458 Pfam PPR repeat family 231 278 IPR002885 -
Cone14ag0193 458 Gene3D Tetratricopeptide repeat domain 250 445 IPR011990 GO:0005515(InterPro)
Cone14ag0193 458 Gene3D Tetratricopeptide repeat domain 1 77 IPR011990 GO:0005515(InterPro)
Cone14ag0193 458 Gene3D Tetratricopeptide repeat domain 88 187 IPR011990 GO:0005515(InterPro)
Cone14ag0193 458 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 130 413 IPR050421 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0193 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0193 Cone-Chr14:877023 Cone1ag0462 Cone-Chr1:4324118 5.56E-89 dispersed
Cone15ag0204 Cone-Chr15:963051 Cone14ag0193 Cone-Chr14:877023 1.12E-88 transposed
Cone19ag1293 Cone-Chr19:8754603 Cone14ag0193 Cone-Chr14:877023 1.33E-12 transposed
Cone14ag0193 Cone-Chr14:877023 Cone15ag0203 Cone-Chr15:962395 7.81E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g805 . . Bda03g01102 . Bpe04g00977 . Bma04g01027 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0193 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008407 1 5 1 1 1 1 1 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 32