Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0207 ATGTTGCAACAGTTCAATTCAAGGAGGCGCTCAAAACTCCGGCTAGCCGGGTTTCTACTTGCAAGCCTGTTTTTTGTTACTTCACAGGGGTTGAATTCAGAAGGGCTCTCCCTCCTAAAGCTAAAAGACAGTCTTAATGATGTTTTCAGTTTTCTCCAAAACTGGAATTCCTCTGACAATACACCCTGCAAATGGACCGGTGTGAATTGCAGTTCAGATTACGATCCATTTGTCTGGTCCCTCAACTTGAGCTCCATGAATCTTTCCGGACCCATCAATCCCATTATTGGTGGTTTAGCCAACTTAACTTTTCTTGATCTTTCATTGAACCGGTTTACGGGTGATATTCCAAAGGAGATTGGAAACTGTACAAAATTGCAATACCTTTCTTTGAACAACAATCAGCTAAATGGTCAGATTCCGTCTGAATTGGGCAAGCTTTCTTCTCTGACAATTTTGAATCTTTGCAATAACAGAATCCATGGCACTATTCCCGAGGAGATTGGCAAGTTGTCTTCACTAATAGAATTTGTCATATTTACGAACAATATTTCCGGCCCGTTGCCTCATTCTATTGGTAATCTCAAGAACTTGAAGAGGATTAGAGCGGGGCAAAATGCTCTTTCAGGAACCATACCGGCCGAAATAGGTGGATGTGAAAGCTTGGAGCTTCTTGGTCTTGCTCAAAACCAGATAGGAGGAGAAATCCCAAATGAAATTGGAATGCTTCGGAATTTAACCGAAATGATCCTTTGGGAGAACACATTATCCGGGTTTATTCCGAAAGAGGTTGGAAACTGTATAAGCCTTGGAACTCTTGCTTTGTACGCGAACAATCTTGTGGGACCCATTCCCAATGAAATAGGGAATTTAATCTATTTGAAGAAGTTGTACCTCTATAGGAATGGATTGAATGGAACCATTCCTAAGGAGCTTGGTAATCTCTCCTGGGTTGAAGAAATTGATTTCTCCGAAAACTTTTTGAATGGAGAGATCCCTCTAGAGCTTGGGAAACTAAGCAGCCTACGCCTACTCTTCCTGTTTCAAAACCAGCTTTCCGGTTTTATCCCCAAGGAACTTAGCCAGTTGAGCAACTTGACAAAGCTTGACCTCTCCATTAACAACCTTCAAGGCTCGATTCCATCCGGGTTTCAGTACTTGACCCAACTGATTCAGTTACAGCTTTTCAACAACTCTCTAAGCGGTTACATTCCTCCAGGTTTGGGCATCCATAGTCAACTTTGGGTGGCTGACTTTTCCGATAACCGCCTTACTGGAAAAATCCCGCCTCATCTTTGTCACCATTCGAATCTGATTCTATTGAATTTTGAATCAAACAAGCTTTATGGAGACATTCCTTATGGTGTCTTGAACTGCAGTTCACTAGTGCAGCTCCGTTTGGGTGGCAACCGCCTTACAGGTGGCTTTCCAGCAGGGCTTTGCAAGCTATCAAACCTGACTGCTGTTGAATTGTACCAAAATAAATTCCATGGTCCAATTCCATCTGATATTAGAAATTGCCAAATGTTGCAAAGGCTCCATATTGGGAACAATTACTTTGTATCTGAATTGCCCAAGGAAATAGGGAATCTCTCTCGCTTGGTAACATTCAATGTTTCATCAAATTTTCTTACTGGAAAAATCCCACCTGAGATTGCAAACTGCAGATTGCTTCAACGGCTTGATCTAAGTCACAACAGCTTTGTGGATACTTTACCAGATGAGCTTGGATCGCTTTTACAGTTGGAGCTTCTTAGAGGTTCGGAAAATAAATTCTCAGGAAGTATACCTTCTGCATTGGGAAACCTTTCACATTTGACTGAACTTCAAATGGGCGGTAACTTTTTCTCGGGTGAAATTCCCATGGAGTTGGGTTCTCTCTCTGGCTTGCAAATTGCTATGAATCTGAGCTGTAATAATCTCTCCGGACAATTACCACCTCAGCTTGGTAATCTTAATTTACTAGAACTTTTACTCCTTAATAACAATAACTTGACAGGTGGAATTCCCGACTCATTCGACAACCTCTCTAGCTTAATGGGTTGCAATTTCTCATACAATGACCTTTCCGGGCCTATACCTTCCACACCTCTTTTCCAAAACATGGGTATCACAAGCTTTATAGGAAATGCAGGACTTTGTGGTGGGCCCATGGGTGATTGTATACGAGCCTCATCTTCCGGCCAGCAGGTCCCACAATCGGAGAATATCAACGGACATAGAGGTAAGATCATTATAGGGGTTACAGTTGCAGTTGGAGGAATCTCTTTAGTTCTGATCGTAATTATTCTCTACTTTATGAGGCATCCACCAAGTGAATCCATTTCTTCCTCACATGACAAGGAGAATATTCATTCTTCTGATTCGGACATCTACTTCTCGCCGCGAGACGGGTTCTCTTTCCAAGATTTAGTTGAAGCCACAAACAACTTTCAAGAGAAATGTGTTATTGGAAAAGGCGCTTGTGGGACTGTTTATAAGGCCGTTATGGATTCGGGTCAAATCATTGCAGTCAAAAAGCTTGGATCAAACAGGGAAGGAAACAACAACAATAATATTGACAATGGCTTCCAGGCCGAGATTTTGACCCTTGGAAATATCAGGCACAGGAACATTGTTAAGCTACACGGGTTTTGCTACCACCAGGGTTTTAATCTGCTGCTTTACGAGTACATGGCGAGGGGTAGTCTCGGAGAGTTGCTTCATGGCAGTCCTTGTCATGTCTTGGAATGGCCTACGCGATTTTCTATAGCTCTAGGTGCAGCAGAGGGCCTTGCTTACTTGCATCACGATTGCAAGCCGAGGATCATTCACCGTGATATCAAGTCTAATAATATACTTCTTGATGATAAGTTTGAGGCCCATGTTGGTGATTTTGGTTTGGCCAAAGTGATCGATATGCCTCACTCTAAATCCATGTCAGCAGTTGCCGGATCATATGGTTATATTGCTCCAGAATATGCATACACAATGAAGGTTACAGAAAAATGCGACATATATAGCTATGGGGTCGTGCTATTGGAGCTATTGACCGGGAAAACTCCGGTACAGCCATTAGATCAGGGAGGTGATCTCGTTTCTTGGGTGAGAAGAAATGTCCGCGAATATTCTTTGACTTCTGAATTACTTGATTCCCAATTGAATCTTCAAGACAAATCCACTGTTTCTCACATGTTGACAGTCTTAAAAATTGCTTTGATGTGCACGAGTGTGTCCCCATTTGACCGGCCCTCAATGCGCGAAGTTGTGTCAATGCTCGTAGAATCAGATGAGAGACAGAGGAACCCAATAACTCCATCTCTAACTCATAATGATTCTTCTCTTAAAGAAGATGATCCTTCTGAATGTCTGATGTGA 3357 42.36 MLQQFNSRRRSKLRLAGFLLASLFFVTSQGLNSEGLSLLKLKDSLNDVFSFLQNWNSSDNTPCKWTGVNCSSDYDPFVWSLNLSSMNLSGPINPIIGGLANLTFLDLSLNRFTGDIPKEIGNCTKLQYLSLNNNQLNGQIPSELGKLSSLTILNLCNNRIHGTIPEEIGKLSSLIEFVIFTNNISGPLPHSIGNLKNLKRIRAGQNALSGTIPAEIGGCESLELLGLAQNQIGGEIPNEIGMLRNLTEMILWENTLSGFIPKEVGNCISLGTLALYANNLVGPIPNEIGNLIYLKKLYLYRNGLNGTIPKELGNLSWVEEIDFSENFLNGEIPLELGKLSSLRLLFLFQNQLSGFIPKELSQLSNLTKLDLSINNLQGSIPSGFQYLTQLIQLQLFNNSLSGYIPPGLGIHSQLWVADFSDNRLTGKIPPHLCHHSNLILLNFESNKLYGDIPYGVLNCSSLVQLRLGGNRLTGGFPAGLCKLSNLTAVELYQNKFHGPIPSDIRNCQMLQRLHIGNNYFVSELPKEIGNLSRLVTFNVSSNFLTGKIPPEIANCRLLQRLDLSHNSFVDTLPDELGSLLQLELLRGSENKFSGSIPSALGNLSHLTELQMGGNFFSGEIPMELGSLSGLQIAMNLSCNNLSGQLPPQLGNLNLLELLLLNNNNLTGGIPDSFDNLSSLMGCNFSYNDLSGPIPSTPLFQNMGITSFIGNAGLCGGPMGDCIRASSSGQQVPQSENINGHRGKIIIGVTVAVGGISLVLIVIILYFMRHPPSESISSSHDKENIHSSDSDIYFSPRDGFSFQDLVEATNNFQEKCVIGKGACGTVYKAVMDSGQIIAVKKLGSNREGNNNNNIDNGFQAEILTLGNIRHRNIVKLHGFCYHQGFNLLLYEYMARGSLGELLHGSPCHVLEWPTRFSIALGAAEGLAYLHHDCKPRIIHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPHSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGKTPVQPLDQGGDLVSWVRRNVREYSLTSELLDSQLNLQDKSTVSHMLTVLKIALMCTSVSPFDRPSMREVVSMLVESDERQRNPITPSLTHNDSSLKEDDPSECLM 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 950468 955293 + Conep14aG0021100.1 Cone14ag0207 452056

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0207 1118 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 411 725 - -
Cone14ag0207 1118 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Cone14ag0207 1118 FunFam Leucine-rich repeat receptor protein kinase MSP1 774 891 - -
Cone14ag0207 1118 MobiDBLite consensus disorder prediction 1088 1118 - -
Cone14ag0207 1118 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 30 189 - -
Cone14ag0207 1118 SUPERFAMILY L domain-like 44 401 - -
Cone14ag0207 1118 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 628 1089 IPR050647 -
Cone14ag0207 1118 SMART serkin_6 811 1086 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone14ag0207 1118 SUPERFAMILY Protein kinase-like (PK-like) 785 1086 IPR011009 -
Cone14ag0207 1118 Gene3D Ribonuclease Inhibitor 278 387 IPR032675 -
Cone14ag0207 1118 Gene3D Transferase(Phosphotransferase) domain 1 892 1108 - -
Cone14ag0207 1118 ProSitePatterns Serine/Threonine protein kinases active-site signature. 936 948 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone14ag0207 1118 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 892 1102 - -
Cone14ag0207 1118 Pfam Leucine Rich Repeat 655 676 IPR001611 GO:0005515(InterPro)
Cone14ag0207 1118 Pfam Leucine Rich Repeat 534 555 IPR001611 GO:0005515(InterPro)
Cone14ag0207 1118 Pfam Leucine Rich Repeat 101 123 IPR001611 GO:0005515(InterPro)
Cone14ag0207 1118 Pfam Leucine Rich Repeat 461 483 IPR001611 GO:0005515(InterPro)
Cone14ag0207 1118 Pfam Leucine Rich Repeat 634 652 IPR001611 GO:0005515(InterPro)
Cone14ag0207 1118 Pfam Leucine Rich Repeat 125 147 IPR001611 GO:0005515(InterPro)
Cone14ag0207 1118 Pfam Leucine Rich Repeat 149 171 IPR001611 GO:0005515(InterPro)
Cone14ag0207 1118 Pfam Leucine Rich Repeat 365 387 IPR001611 GO:0005515(InterPro)
Cone14ag0207 1118 Pfam Leucine Rich Repeat 558 579 IPR001611 GO:0005515(InterPro)
Cone14ag0207 1118 Pfam Leucine Rich Repeat 294 315 IPR001611 GO:0005515(InterPro)
Cone14ag0207 1118 ProSiteProfiles Protein kinase domain profile. 811 1098 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone14ag0207 1118 Gene3D Ribonuclease Inhibitor 30 181 IPR032675 -
Cone14ag0207 1118 Gene3D Ribonuclease Inhibitor 182 277 IPR032675 -
Cone14ag0207 1118 FunFam Putative leucine-rich repeat receptor-like protein kinase 290 380 - -
Cone14ag0207 1118 Gene3D Phosphorylase Kinase; domain 1 773 891 - -
Cone14ag0207 1118 Gene3D Ribonuclease Inhibitor 388 729 IPR032675 -
Cone14ag0207 1118 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 190 282 - -
Cone14ag0207 1118 Pfam Protein kinase domain 812 1084 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone14ag0207 1118 SMART LRR_typ_2 555 579 IPR003591 -
Cone14ag0207 1118 SMART LRR_typ_2 291 315 IPR003591 -
Cone14ag0207 1118 SMART LRR_typ_2 99 123 IPR003591 -
Cone14ag0207 1118 SMART LRR_typ_2 339 362 IPR003591 -
Cone14ag0207 1118 SMART LRR_typ_2 147 171 IPR003591 -
Cone14ag0207 1118 SMART LRR_typ_2 195 219 IPR003591 -
Cone14ag0207 1118 SMART LRR_typ_2 387 411 IPR003591 -
Cone14ag0207 1118 SMART LRR_typ_2 243 267 IPR003591 -
Cone14ag0207 1118 SMART LRR_typ_2 363 386 IPR003591 -
Cone14ag0207 1118 SUPERFAMILY L domain-like 458 718 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0207 K27590 - - rcu:8265655 1489.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0048 Cone-Chr10:294578 Cone14ag0207 Cone-Chr14:950468 1.58E-65 dispersed
Cone12ag0238 Cone-Chr12:1273529 Cone14ag0207 Cone-Chr14:950468 1.20E-141 dispersed
Cone13ag0090 Cone-Chr13:558200 Cone14ag0207 Cone-Chr14:950468 2.68E-14 dispersed
Cone14ag0207 Cone-Chr14:950468 Cone5ag0575 Cone-Chr5:2489788 1.80E-168 dispersed
Cone3ag0061 Cone-Chr3:361209 Cone14ag0207 Cone-Chr14:950468 2.87E-65 dispersed
Cone4ag1223 Cone-Chr4:10215056 Cone14ag0207 Cone-Chr14:950468 3.00E-42 dispersed
Cone7ag0549 Cone-Chr7:2604718 Cone14ag0207 Cone-Chr14:950468 1.50E-67 dispersed
Cone8ag0231 Cone-Chr8:1323930 Cone14ag0207 Cone-Chr14:950468 1.86E-18 dispersed
Cone9ag1416 Cone-Chr9:10501865 Cone14ag0207 Cone-Chr14:950468 2.91E-64 dispersed
Cone14ag0207 Cone-Chr14:950468 Cone14ag0208 Cone-Chr14:966259 7.62E-75 tandem
Cone14ag0207 Cone-Chr14:950468 Cone15ag0228 Cone-Chr15:1072242 1.86E-61 wgd
Cone14ag0207 Cone-Chr14:950468 Cone4ag0381 Cone-Chr4:1732760 1.33E-84 wgd
Cone14ag0207 Cone-Chr14:950468 Cone4ag1266 Cone-Chr4:10422660 2.59E-69 wgd
Cone14ag0207 Cone-Chr14:950468 Cone7ag0369 Cone-Chr7:1606393 4.80E-190 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g839 . . . . . . . Bma05g01270 Cmo08g01010 Cmo17g00120 . . . . . . . . . . . . . . . . . . . . . Cone14ag0207 . . . . . Chy05g00265 . . . . . . . . . . . . . . Car08g00914 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001136 3 4 2 2 3 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 1 1 2 2 1 0 1 69
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82069 PF14226 DIOX_N 3.50E-20 CL0029 Cone PK