Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag0208 ATGTCTGCAATGCCCACCTCGAGGCAACTCTTCTCATTCCCTTCCATCTTCTTCTGCTTGTTCTTCTTCTACTTCATTTCGCCTTCTTTCTCTACAAACAATGAAGCTTCCCTCCTCTTCTCATGGCTTCACTCTGTTTCCTCTGTTTCTTCTTCTTCTTCTCCTTCCTTCTTCTCCAACTGGAACCTTCTTGACCCAAACCCATGTAACTGGACCGCCATTTCCTGCTCTCCTCAAGGCTTCGTTACAGAAATCAACATCCAATCCACCCCTTTAGACCTTCAAATGCCTTCAAATCTCTCTTCTCTCCACTCTCTACGCAAGCTCGTAATCTCTGATTCCAACCTGACCGGAACAATCCCTGCTGACATTGGCAACTGCCCGGAACTTAAAACCATTGATTTAAGCTCAAACAGTCTTGTGGGTCCCATCCCTTCTAGTCTGGGAAAGCTTCAAAATCTTGAGGACTTGATTCTGAACTCAAATCAGCTGACTGGAAAAATTCCAGTTGAGATAACCGACTCGAAGAGTCTTAAGAATCTTTTGCTCTTCGATAACAGGTTGAGTGGGAATCTTCCATCTGAGGTGGGGAAATTAAAGAATCTTCAAGTTCTTAGAGCAGGAGGGAATAAGGACATTGTAGGGGAAATTCCGGAGGAGATTGGAAACTGCTCGAACTTGATCGTCTTGGGCCTGGCCGATAGTCGGATTTCGGGATCTTTGCCGGGCTCATTGGGCCGGCTCGGAAAGCTTCAAACTTTGTCAATTTACACTACAATGCTCTCTGGAGAAATCCCAAGTGAAATAGGTAACTGCTCTGAGCTCATCAACTTGTATCTTTATGAAAATAGCCTTTCTGGAACAATCCCGGATCAGCTCGGAAAGCTTCAGAAACTAGAACAGTTGTTTCTATGGCAGAATGGAATTGTGGGGTCGATCCCAGAAGAAATCTGTAATTGCACTAGCTTGAAAAGAATTGATCTTTCTTTGAATTCATTATCCGGGTCGATCCCATTGTCCATAGGAAACCTTTTCGAGCTAGAAGAGTTTATGTTAAGTGATAACAATATAACTGGATCTATACCTTCTAACATCTCAAATGCTAAGAACTTGATTCAGTTACAGCTCTATACGAATCAGATTTCGGGTTTGATCCCGTCTGAAATCGGTTCTTTGTCTAAGCTCAATGTGTTTTTTGCTTGGGAGAATCAGCTAGAAGGAAGCATCCCTTCAGCTTTAGCTAGTTGCTATAACCTAGAAGCTTTGGATTTATCTCACAATGCTCTTACGGGTAGTATTCCTCCAGGTTTGTTTTCCCTCCAAAATCTCACTAAGCTTTTGCTCATTTCGAATGATATTTCCGGTTCGATCCCATTAGAAATTGGTGATTGTAAATCTCTTGTCCGGCTTCGGCTTGGAGAGAATCGGATCAATGGCGAGATTCCGAGATCCATTGGGAATCTTAGTCGGTTGAACTTTCTAGATCTTTCTAGAAACCGCCTTTCCGGGCGGGTCCCGGACGAGATGGGGAGTTGCATGGAATTGCAAATGATTGACCTAAGCAACAACATTATCGGCGGGCCCTTGCCTAACTCTATATCTTCTCTATCAGGACTACAAGTCTTGGACGTTTCTTCAAATCGGTTTTCTGGCCAAATCCTGACTAGTTTGGGCCGTATGGTTTCACTTAACAAGCTCATTCTCAGTTCGAATTCATTTTCAGGAACAATTCCGTCTTCTCTAAGCCTATGTTCAAGTCTACAGTTGCTTGATCTTAGTAACAACCAACTTACTGGACCCGTCCCAGTTGAACTCGGTCTTATCGAAACTCTCGAGATTGCTCTGAATCTAAGTTGTAATGGGTTTACCGGTTCAATACCGGCTCAAATGTCTTCACTCACCAAACTTTCGGTTCTAGATATTTCACATAACAATCTTGAAGGGGACTTAAAACCTCTTTCCAGGCTCGATAATCTTGTCTCTCTTAACATCTCTCACAACAACTTCTCTGGTTACTTACCCGACAACAAGCTTTTCCGACAATTATCACCCATGGACCTAACTGGAAATGATGGTCTATGTTCCTCGATCCAAGATTCTTGTTTTGTAACTGATTCGGTTAGTTCCGGACTTGGAAGAAAAGGGAAGGAACAATCAAGGAAACTCAGGTTAGCAATCGCATTTTTAACCGCCCTTACGGTTGCAATGATAGTTGTGGGGATAATTGCGGTTGTTAGAGCAAGAATGACAATAAGAGACAATGATGATGATTCAGAGTTAGGAGAGACATGGCCTTGGCAATTCACGCCGTTCCAAAAGTTGAACTTCTCGGTCGATCAAATACTAAGATGTCTAGTAGATTCTAACGTGATTGGAAAAGGTTGCTCTGGGGTGGTTTATCGTGCTGATATGGATGATGGGGAAGTGGTTGCCGTGAAGAAGCTATGGCCCACAACAATAGCGGCAAGTAAAGACGATAGCAAAAGTGGGGTCCGAGATTCTTTTTCAGCCGAGGTGAAGACATTGGGTTCGATCCGTCATAAGAACATTGTTCGATTCTTGGGATGTTGTTGGAACCGAAACACGAGGTTGCTCATGTATGATTACATGCCGAATGGTAGTTTAGGTAGTCTTCTTCATGAGCGGACCGGAAATGCTTTAGAATGGGAGCTTAGGTACCAAATTCTACTAGGTGCGGCTCAAGGCCTTTCTTATTTACACCATGATTGCGTCCCTCCCATTGTTCATAGAGACATTAAGGCCAATAACATCCTCATTGGCCTTGAATTTGAGCCCTACATTGCTGATTTCGGTCTAGCCAAGCTTGTTGATGATGGCGATTTTGCTCGGTCCTCTAACACCATTGCCGGTTCATATGGATATATTGCTCCTGAATATGGGTACATGATGAAGATTACGGAGAAGAGTGATGTCTACAGTTACGGAGTGGTAGTACTTGAAGTATTGACGGGGAAGCAACCGATTGATCCGACGATTCCGGATGGGTTACATGTAGTGGATTGGGTGAAGAAGAAAAGAGGGATCGAAGTTATAGATACAGGCCTACTTTCAAGACCCGAGTCCGAAATAGAGGAGATGATGCAAGCACTAGGGATAGCCTTGTTGTGTGTAAACTCCTCTCCAGATGAGAGACCGACAATGAAAGATGCAGCGGCGATGCTTAAAGAAATTAGACATGATCAAAGAGAAGAGTACGCTAAGGTTGATGTGCTTCTTAAGGGATCTCCGGCAAATAATTGCCTGGAAAATACAAATTCCGGCACTGGAGCTCCAGATCCGGTACCCACAACATCGTCATCAAAGGTGGTGGTGATGCATGGATTGTACCCGAAAAGTACCAATACGAGCTTCTCAGCATCTTCATTGCTTCACTCATCTTCTTCCTCTAGTGCCAAAAAAATGGGATTAAAGTGA 3435 43.61 MSAMPTSRQLFSFPSIFFCLFFFYFISPSFSTNNEASLLFSWLHSVSSVSSSSSPSFFSNWNLLDPNPCNWTAISCSPQGFVTEINIQSTPLDLQMPSNLSSLHSLRKLVISDSNLTGTIPADIGNCPELKTIDLSSNSLVGPIPSSLGKLQNLEDLILNSNQLTGKIPVEITDSKSLKNLLLFDNRLSGNLPSEVGKLKNLQVLRAGGNKDIVGEIPEEIGNCSNLIVLGLADSRISGSLPGSLGRLGKLQTLSIYTTMLSGEIPSEIGNCSELINLYLYENSLSGTIPDQLGKLQKLEQLFLWQNGIVGSIPEEICNCTSLKRIDLSLNSLSGSIPLSIGNLFELEEFMLSDNNITGSIPSNISNAKNLIQLQLYTNQISGLIPSEIGSLSKLNVFFAWENQLEGSIPSALASCYNLEALDLSHNALTGSIPPGLFSLQNLTKLLLISNDISGSIPLEIGDCKSLVRLRLGENRINGEIPRSIGNLSRLNFLDLSRNRLSGRVPDEMGSCMELQMIDLSNNIIGGPLPNSISSLSGLQVLDVSSNRFSGQILTSLGRMVSLNKLILSSNSFSGTIPSSLSLCSSLQLLDLSNNQLTGPVPVELGLIETLEIALNLSCNGFTGSIPAQMSSLTKLSVLDISHNNLEGDLKPLSRLDNLVSLNISHNNFSGYLPDNKLFRQLSPMDLTGNDGLCSSIQDSCFVTDSVSSGLGRKGKEQSRKLRLAIAFLTALTVAMIVVGIIAVVRARMTIRDNDDDSELGETWPWQFTPFQKLNFSVDQILRCLVDSNVIGKGCSGVVYRADMDDGEVVAVKKLWPTTIAASKDDSKSGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERTGNALEWELRYQILLGAAQGLSYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFARSSNTIAGSYGYIAPEYGYMMKITEKSDVYSYGVVVLEVLTGKQPIDPTIPDGLHVVDWVKKKRGIEVIDTGLLSRPESEIEEMMQALGIALLCVNSSPDERPTMKDAAAMLKEIRHDQREEYAKVDVLLKGSPANNCLENTNSGTGAPDPVPTTSSSKVVVMHGLYPKSTNTSFSASSLLHSSSSSSAKKMGLK 1144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 966259 969778 - Conep14aG0021200.1 Cone14ag0208 452057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag0208 1144 Gene3D Ribonuclease Inhibitor 32 196 IPR032675 -
Cone14ag0208 1144 Gene3D Ribonuclease Inhibitor 613 702 IPR032675 -
Cone14ag0208 1144 SUPERFAMILY Outer arm dynein light chain 1 557 694 - -
Cone14ag0208 1144 ProSiteProfiles Leucine-rich repeat profile. 418 440 IPR001611 GO:0005515(InterPro)
Cone14ag0208 1144 PANTHER LEUCINE RICH REPEAT KINASE 2 367 1064 IPR051420 -
Cone14ag0208 1144 ProSiteProfiles Protein kinase domain profile. 785 1069 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone14ag0208 1144 SMART LRR_typ_2 488 512 IPR003591 -
Cone14ag0208 1144 SMART LRR_typ_2 103 127 IPR003591 -
Cone14ag0208 1144 SMART LRR_typ_2 151 175 IPR003591 -
Cone14ag0208 1144 SMART LRR_typ_2 560 584 IPR003591 -
Cone14ag0208 1144 SMART LRR_typ_2 416 440 IPR003591 -
Cone14ag0208 1144 SMART LRR_typ_2 656 681 IPR003591 -
Cone14ag0208 1144 SMART LRR_typ_2 344 368 IPR003591 -
Cone14ag0208 1144 SMART LRR_typ_2 296 320 IPR003591 -
Cone14ag0208 1144 SMART serkin_6 785 1061 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone14ag0208 1144 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 768 869 - -
Cone14ag0208 1144 ProSiteProfiles Leucine-rich repeat profile. 635 657 IPR001611 GO:0005515(InterPro)
Cone14ag0208 1144 SUPERFAMILY Protein kinase-like (PK-like) 766 1062 IPR011009 -
Cone14ag0208 1144 Gene3D Phosphorylase Kinase; domain 1 769 869 - -
Cone14ag0208 1144 Gene3D Ribonuclease Inhibitor 434 528 IPR032675 -
Cone14ag0208 1144 Gene3D Ribonuclease Inhibitor 529 612 IPR032675 -
Cone14ag0208 1144 SUPERFAMILY RNI-like 255 605 - -
Cone14ag0208 1144 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 870 1080 - -
Cone14ag0208 1144 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 418 705 - -
Cone14ag0208 1144 Gene3D Transferase(Phosphotransferase) domain 1 870 1081 - -
Cone14ag0208 1144 SUPERFAMILY L domain-like 52 307 - -
Cone14ag0208 1144 FunFam Leucine-rich receptor-like protein kinase family protein 313 411 - -
Cone14ag0208 1144 ProSitePatterns Protein kinases ATP-binding region signature. 791 814 IPR017441 GO:0005524(InterPro)
Cone14ag0208 1144 MobiDBLite consensus disorder prediction 1084 1106 - -
Cone14ag0208 1144 MobiDBLite consensus disorder prediction 1120 1144 - -
Cone14ag0208 1144 Pfam Protein tyrosine and serine/threonine kinase 789 1058 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone14ag0208 1144 FunFam Nuclear pore complex protein NUP107 32 192 - -
Cone14ag0208 1144 PRINTS Leucine-rich repeat signature 633 646 - -
Cone14ag0208 1144 PRINTS Leucine-rich repeat signature 587 600 - -
Cone14ag0208 1144 FunFam Predicted protein 193 291 - -
Cone14ag0208 1144 ProSitePatterns Serine/Threonine protein kinases active-site signature. 914 926 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone14ag0208 1144 Pfam Leucine rich repeat 128 188 IPR001611 GO:0005515(InterPro)
Cone14ag0208 1144 Gene3D Ribonuclease Inhibitor 209 433 IPR032675 -
Cone14ag0208 1144 Pfam Leucine Rich Repeat 347 367 IPR001611 GO:0005515(InterPro)
Cone14ag0208 1144 Pfam Leucine Rich Repeat 515 536 IPR001611 GO:0005515(InterPro)
Cone14ag0208 1144 Pfam Leucine Rich Repeat 298 320 IPR001611 GO:0005515(InterPro)
Cone14ag0208 1144 Pfam Leucine Rich Repeat 491 512 IPR001611 GO:0005515(InterPro)
Cone14ag0208 1144 Pfam Leucine Rich Repeat 562 582 IPR001611 GO:0005515(InterPro)
Cone14ag0208 1144 Pfam Leucine Rich Repeat 105 127 IPR001611 GO:0005515(InterPro)
Cone14ag0208 1144 Pfam Leucine Rich Repeat 658 675 IPR001611 GO:0005515(InterPro)
Cone14ag0208 1144 Pfam Leucine Rich Repeat 539 560 IPR001611 GO:0005515(InterPro)
Cone14ag0208 1144 Pfam Leucine Rich Repeat 586 606 IPR001611 GO:0005515(InterPro)
Cone14ag0208 1144 Pfam Leucine Rich Repeat 275 296 IPR001611 GO:0005515(InterPro)
Cone14ag0208 1144 Pfam Leucine Rich Repeat 418 440 IPR001611 GO:0005515(InterPro)
Cone14ag0208 1144 Pfam Leucine Rich Repeat 466 488 IPR001611 GO:0005515(InterPro)
Cone14ag0208 1144 Pfam Leucine Rich Repeat 322 344 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag0208 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0208 Cone-Chr14:966259 Cone15ag0228 Cone-Chr15:1072242 1.06E-168 dispersed
Cone14ag0207 Cone-Chr14:950468 Cone14ag0208 Cone-Chr14:966259 7.62E-75 tandem
Cone15ag0229 Cone-Chr15:1073223 Cone14ag0208 Cone-Chr14:966259 7.06E-124 transposed
Cone14ag0208 Cone-Chr14:966259 Cone4ag0382 Cone-Chr4:1733372 3.53E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g842 . . . . . . . . Cmo08g01007 . . . . . . . Cpe03g01568 . . . . . . . . . . . . . . Cone14ag0208 Cone15ag0229 . . . . . . . . . . . . . . . . . Cma08g01036 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000434 1 4 5 2 3 4 5 3 4 4 4 4 5 4 3 5 4 5 6 4 4 3 3 2 3 4 3 1 2 3 107
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82070 PF04535 DUF588 1.40E-26 CL0396 Cone PK